Abstract Settling aggregates transport organic matter from the ocean surface to the deep sea and seafloor. Though plankton communities impact carbon export, how specific organisms and their interactions affect export efficiency is unknown. Looking at 15 years of eDNA sequences (18S-V4) from settling and sedimented organic matter in the Fram Strait, here we observe that most phylogenetic groups were transferred from pelagic to benthic ecosystems. Chaetoceros socialis , sea-ice diatoms, Radiolaria, and Chaetognatha are critical components of vertical carbon flux to 200 m depth. In contrast, the diatom C. socialis alone is essential for the amount of organic carbon reaching the seafloor. Spatiotemporal changes in community composition show decreasing diatom abundance during warm anomalies, which would reduce the efficiency of a diatom-driven biological carbon pump. Interestingly, several parasites are also tightly associated with carbon flux and show a strong vertical connectivity, suggesting a potential role in sedimentation processes involving their hosts, especially through interactions with resting spores, which could have implications for pelagic-benthic coupling and overall ecosystem functioning.

Abstract The long‐term dynamics of microbial communities across geographic, hydrographic, and biogeochemical gradients in the Arctic Ocean are largely unknown. To address this, we annually sampled polar, mixed, and Atlantic water masses of the Fram Strait (2015–2019; 5–100 m depth) to assess microbiome composition, substrate concentrations, and oceanographic parameters. Longitude and water depth were the major determinants (~30%) of microbial community variability. Bacterial alpha diversity was highest in lower‐photic polar waters. Community composition shifted from west to east, with the prevalence of, for example, Dadabacteriales and Thiotrichales in Arctic‐ and Atlantic‐influenced waters, respectively. Concentrations of dissolved organic carbon peaked in the western, compared to carbohydrates in the chlorophyll‐maximum of eastern Fram Strait. Interannual differences due to the time of sampling, which varied between early (June 2016/2018) and late (September 2019) phytoplankton bloom stages, illustrated that phytoplankton composition and resulting availability of labile substrates influence bacterial dynamics. We identified 10 species clusters with stable environmental correlations, representing signature populations of distinct ecosystem states. In context with published metagenomic evidence, our microbial‐biogeochemical inventory of a key Arctic region establishes a benchmark to assess ecosystem dynamics and the imprint of climate change.

Abstract Globally, the most intense uptake of anthropogenic carbon dioxide (CO2) occurs in the Atlantic north of 50°N, and it has been predicted that atmospheric CO2 sequestration in the Arctic Ocean will increase as a result of ice-melt and increased primary production. However, little is known about the impact of pan-Arctic sea-ice decline on carbon export processes. We investigated the potential ballasting effect of sea-ice derived material on settling aggregates and carbon export in the Fram Strait by combining 13 years of vertical flux measurements with benthic eDNA analysis, laboratory experiments, and tracked sea-ice distributions. We show that melting sea-ice in the Fram Strait releases cryogenic gypsum and terrigenous material, which ballasts sinking organic aggregates. As a result, settling velocities of aggregates increased ≤10-fold, resulting in ≤30% higher carbon export in the vicinity of the melting ice-edge. Cryogenic gypsum is formed in first-year sea-ice, which is predicted to increase as the Arctic is warming. Simultaneously, less sea-ice forms over the Arctic shelves, which is where terrigenous material is incorporated into sea-ice. Supporting this, we found that terrigenous fluxes from melting sea-ice in the Fram Strait decreased by >80% during our time-series. Our study suggests that terrigenous flux will eventually cease when enhanced sea-ice melt disrupts trans-Arctic sea-ice transport and thus, limit terrigenous-ballasted carbon flux. However, the predicted increase in Arctic primary production and gypsum formation may enhance gypsum-ballasted carbon flux and compensate for lowered terrigenous fluxes. It is thus unclear if sea-ice loss will reduce carbon export in the Arctic Ocean.

Abstract Repeated measurements of benthic and pelagic parameters in the rapidly changing Arctic Ocean provide a unique insight into spatial and interannual trends and changes in the ecosystem. Here, we compiled biogenic and biogeochemical measurements collected from sediment cores at the Long-Term Ecological Research Observatory HAUSGARTEN located in the Fram Strait. A total of 21 stations were visited yearly over a period of 18 years (2002–2019). The time series highlighted an increase in bacterial numbers for samples collected 50 days after the peak phytoplankton bloom. Although bacterial abundances were not bathymetric depth-dependent when viewed across all years, we observed a seasonal trend in benthic microbial abundance closely related to the timing of the phytoplankton bloom with a time-lag of 100 days between the surface phytoplankton peak and the peak in bacterial abundance in the sediment. Considering the residence time of phytoplankton in the upper ocean and the water depth, we estimated an average settling velocity for phytodetritus of 30 m.d−1, which is similar to previous observations from Fram Strait. This suggests that settling organic matter promotes vertical microbial connectivity and benthic bacterial abundance in the deep ocean, shaping the microbial biogeography, diversity, and biogeochemical processes.

The Fram Strait connects the Atlantic and Arctic Oceans and is a key conduit for sea ice advected southward by the Transpolar Drift and northward inflow of warm Atlantic Waters. Continued sea ice decline and “Atlantification” are expected to influence pelagic–benthic coupling in the Fram Strait and Arctic as a whole. However, interannual variability and the impact of changing ice conditions on deepwater particle fluxes in the Arctic remain poorly characterized. Here, we present long-term sediment trap records (2000–2013) from mesopelagic (200 m) and bathypelagic (2,300 m) depths at two locations (HGIV and HGN) in the Fram Strait subjected to variable ice conditions. Sediment trap catchment areas were estimated and combined with remote sensing data and a high-resolution model to determine the ice cover, chlorophyll concentration, and prevailing stratification regimes. Surface chlorophyll increased between 2000 and 2013, but there was no corresponding increase in POC flux, suggesting a shift in the efficiency of the biological carbon pump. A decrease in particulate biogenic Si flux, %opal, Si:POC, and Si:PIC at mesopelagic depths indicates a shift away from diatom-dominated export as a feasible explanation. Biogenic components accounted for 72% ± 16% of mass flux at 200 m, but were reduced to 34% ± 11% at 2,300 m, substituted by a residual (lithogenic) material. Total mass fluxes of biogenic components, including POC, were higher in the bathypelagic. Biomarkers and ∂ 13 C values suggest both lateral advection and ice-rafted material contribute to benthic carbon input, although constraining their precise contribution remains challenging. The decadal time series was used to describe two end-members of catchment area conditions representing the maximum temperatures of Atlantic inflow water in 2005 at HGIV and high ice coverage and a meltwater stratification regime at HGN in 2007. Despite similar chlorophyll concentrations, bathypelagic POC flux, Si flux, Si:POC, and Si:PIC were higher and POC:PIC was lower in the high-ice/meltwater regime. Our findings suggest that ice concentration and associated meltwater regimes cause higher diatom flux. It is possible this will increase in the future Arctic as meltwater regimes increase, but it is likely to be a transient feature that will disappear when no ice remains.

Marine sinking particles sequester atmospheric carbon dioxide to the deep ocean via the biological carbon pump. Understanding how environmental shifts drive changes in the microbial composition of particles, and how these affect the export of organic matter from the surface to the deep ocean, is critical, especially in the rapidly changing Arctic Ocean. Here, we applied next generation sequencing of the 18S and 16S rRNA genes to sediment trap samples from around 200 m water depth in the eastern Fram Strait, covering a time frame of more than one decade (2000-2012). The aim was to characterize their microbial composition during annual highest particulate organic carbon flux events. The bimodal annual spring and summer export fluxes were representative of the strong seasonality in the region. Furthermore, the study period was characterized by considerable interannual variation, marked especially by a warm water anomaly between 2005 and 2007. During this period changes in the hydrography and sea ice cover also led to measurable changes in the microbial composition of particles. The warm water period was marked by a decrease in diatoms affiliated with Chaetoceros , an increase of small phytoplankton and an increase in sequence abundance of the bacterial taxa Oceanospirillales , Alteromonadales and Rhodobacterales on the particles. The resulting changes in microbial composition and the associated microbial network structure suggest the emergence of a more developed retention system in the surface ocean. Our results provide the first long-term assessment of the microbial composition of sinking particles in the Arctic Ocean, and stress the importance of sea ice and hydrography for particle composition and subsequent flux of organic matter to deeper waters.

Abstract The collection of zooplankton swimmers and sinkers in time‐series sediment traps provides unique insight into year‐round and interannual trends in zooplankton population dynamics. These samples are particularly valuable in remote and difficult to access areas such as the Arctic Ocean, where samples from the ice‐covered season are rare. In the present study, we investigated zooplankton composition based on swimmers and sinkers collected by sediment traps at water depths of 180–280, 800–1320, and 2320–2550 m, over a period of 16 yr (2000–2016) at the Long‐Term Ecological Research observatory HAUSGARTEN located in the eastern Fram Strait (79°N, 4°E). The time‐series data showed seasonal and interannual trends within the dominant zooplankton groups including copepoda, foraminifera, ostracoda, amphipoda, pteropoda, and chaetognatha. Amphipoda and copepoda dominated the abundance of swimmers while pteropoda and foraminifera were the most important sinkers. Although the seasonal occurrence of these groups was relatively consistent between years, there were notable interannual variations in abundance, suggesting the influence of various environmental conditions such as sea‐ice dynamic and lateral advection of water masses, for example, meltwater and Atlantic water. Statistical analyses revealed a correlation between the Arctic dipole climatic index and sea‐ice dynamics (i.e., ice coverage and concentration), as well as the importance of the distance from the ice edge on swimmer composition patterns and carbon export.

Understanding seasonal and multiyear variability of primary producers’ populations in the Mauritanian coastal upwelling system along the northwestern African margin may help to predict future impact of climate change (e.g., nutrient availability, productivity, and phyto- and zooplankton dynamics). For this, continuous, long time-series are required. A major challenge in obtaining these time-series is the logistics associated with the uninterrupted, in-situ sampling over several years. Sediment traps represent a reliable alternative. In this study, we assess the variations of the diatom community in samples almost continuously collected between June 2003 and March 2020 with 17 sediment traps deployed at site CBeu (=Cape Blanc eutrophic), located at c. 20°N-18°45’W, offshore Mauritania in the Canary Current Eastern Boundary Upwelling Ecosystems (CC-EBUE). In addition to describing the multiyear dynamics of the total diatom flux and major shifts in the species-specific composition of the populations, our study addresses questions such as ( i ) how constant is the intrannual pattern of populations’ occurrence, ( ii ) what the amplitude of annual changes is, and ( iii ) how populations’ shifts relate to physical setting dynamics. Matching the occurrence of most intense seasonal upwelling, highest diatom flux maxima mainly occur in spring and summer between 2003 and 2020. The diverse diatom community (e.g., benthic, coastal upwelling, coastal planktonic, and open-ocean diatoms) closely follows the annual cycle of atmospheric and hydrologic conditions. Benthic diatoms dominate during spring and summer (e.g., upwelling season), while open-ocean diatoms contribute the most in fall and winter when the upper water column stratifies. As no persistent –either decreasing or increasing trend of diatom productivity over the 17 sampled years, our results are at odds with Bakun’s hypothesis of upwelling intensification. Anchoring temporal changes of diatoms in a wider environmental frame allows for insights into the complex dynamics of the Mauritanian upwelling ecosystem and the populations’ response to climate forcing. This helps in establishing the scientific basis for modeling future states of the CC-EBUE and/or comparable environments.

Abstract. Eastern boundary upwelling ecosystems (EBUEs) are among the most productive marine regions in the world's oceans. Understanding the degree of interannual to decadal variability in the Mauritania upwelling system is crucial for the prediction of future changes of primary productivity and carbon sequestration in the Canary Current EBUE as well as in similar environments. A multiyear sediment trap experiment was conducted at the mooring site CBmeso (“Cape Blanc mesotrophic”, ca. 20∘ N, ca. 20∘40′ W) in the highly productive coastal waters off Mauritania. Here, we present results on fluxes of diatoms and the species-specific composition of the assemblage for the time interval between March 1988 and June 2009. The temporal dynamics of diatom populations allows the proposal of three main intervals: (i) early 1988–late 1996, (ii) 1997–1999, and (iii) early 2002–mid 2009. The Atlantic Multidecadal Oscillation (AMO) appears to be an important driver of the long-term dynamics of diatom population. The long-term AMO-driven trend is interrupted by the occurrence of the strong 1997 El Niño–Southern Oscillation (ENSO). The extraordinary shift in the relative abundance of benthic diatoms in May 2002 suggests the strengthening of offshore advective transport within the uppermost layer of filament waters and in the subsurface and in deeper and bottom-near layers. It is hypothesized that the dominance of benthic diatoms was the response of the diatom community to the intensification of the slope and shelf poleward undercurrents. This dominance followed the intensification of the warm phase of AMO and the associated changes of the Atlantic Meridional Overturning Circulation. Transported valves (siliceous remains) from shallow Mauritanian coastal waters into the bathypelagic should be considered for the calculation and model experiments of bathy- and pelagic nutrients budgets (especially Si), the burial of diatoms, and the paleoenvironmental signal preserved in downcore sediments. Additionally, our 1988–2009 data set contributes to the characterization of the impact of low-frequency climate forcings in the northeastern Atlantic and will be especially helpful for establishing the scientific basis for forecasting and modeling future states of the Canary Current EBUE and its decadal changes.

Abstract Arctic Ocean sea ice cover is shrinking due to warming. Long-term sediment trap data shows higher export efficiency of particulate organic carbon in regions with seasonal sea ice compared to regions without sea ice. To investigate this sea-ice enhanced export, we compared how different early summer phytoplankton communities in seasonally ice-free and ice-covered regions of the Fram Strait affect carbon export and vertical dispersal of microbes. In situ collected aggregates revealed two-fold higher carbon export of diatom-rich aggregates in ice-covered regions, compared to Phaeocystis aggregates in the ice-free region. Using microbial source tracking, we found that ice-covered regions were also associated with more surface-born microbial clades exported to the deep sea. Taken together, our results showed that ice-covered regions are responsible for high export efficiency and provide strong vertical microbial connectivity. Therefore, continuous sea-ice loss may decrease the vertical export efficiency, and thus the pelagic-benthic coupling, with potential repercussions for Arctic deep-sea ecosystems.

While Ocean modeling has made significant advances over the last decade, its complex biological component is still oversimplified. In particular, modeling organisms in the ocean system must integrate parameters to fit both physiological and ecological behaviors that are together very difficult to determine. Such difficulty occurs for modeling Pelagia noctiluca. This jellyfish has a high abundance in the Mediterranean Sea and could contribute to several biogeochemical processes. However, gelatinous zooplanktons remain poorly represented in biogeochemical models because uncertainties about their ecophysiology limit our understanding of their potential role and impact. To overcome this issue, we propose, for the first time, the use of the Statistical Model Checking Engine (SMCE), a probabilitybased computational framework that considers a set of parameters as a whole. Contrary to standard parameter inference techniques, SMCE identifies sets of parameters that fit both laboratory-culturing observations and in situ patterns while considering uncertainties. Doing so, we estimated the best parameter sets of the ecophysiological model that represents the jellyfish growth and degrowth in laboratory conditions as well as its size. Behind this application, SMCE remains a computational framework that supports the projection of a model with uncertainties in broader contexts such as biogeochemical processes to drive future studies.

Abstract. The relative abundance of individual archaeal membrane lipids, namely of glycerol dialkyl glycerol tetraethers (GDGTs) with different numbers of cyclopentane rings, varies with temperature, which enables their use as a paleotemperature proxy index. The first GDGT-based index in marine sediments called TEX86 is believed to reflect mean annual sea surface temperature (maSST). The TEX86L is an alternative temperature proxy for “low-temperature” regions (<15 ∘C), where the original TEX86 proxy calibration shows a larger scatter. However, TEX86L-derived temperatures still display anomalous estimates in polar regions. In order to elucidate the potential cause of the disagreement between the TEX86L estimate and SST, we analyzed GDGT fluxes and TEX86L-derived temperatures in sinking particles collected with time-series sediment traps in high-northern- and high-southern-latitude regions. At 1296 m depth in the eastern Fram Strait (79∘ N), a combination of various transporting mechanisms for GDGTs might result in seasonally different sinking velocities for particles carrying these lipids, resulting in strong variability in the TEX86L signal. The similarity of flux-weighted TEX86L temperatures from sinking particles and surface sediments implies an export of GDGTs without alteration in the Fram Strait. The estimated temperatures correspond to temperatures in water depths of 30–80 m, where nitrification might occur, indicating the favorable depth habitat of Thaumarchaeota. In the Antarctic Polar Front of the Atlantic sector (50∘ S), TEX86L-derived temperatures displayed warm and cold biases compared to satellite-derived SSTs at 614 m depth, and its flux-weighted mean signal differs from the deep signal at 3196 m. TEX86L-derived temperatures at 3196 m depth and the surface sediment showed up to 7 ∘C warmer temperatures relative to satellite-derived SST. Such a warm anomaly might be caused by GDGT contributions from Euryarchaeota, which are known to dominate archaeal communities in the circumpolar deep water of the Antarctic Polar Front. The other reason might be that a linear calibration is not appropriate for this frontal region. Of the newly suggested SST proxies based on hydroxylated GDGTs (OH-GDGTs), only those with OH-GDGT–0 and crenarchaeol or the ring index (RI) of OH-GDGTs yield realistic temperature estimates in our study regions, suggesting that OH-GDGTs could be applied as a potential temperature proxy in high-latitude oceans.

Le terme plancton désigne l'ensemble des organismes dérivant au grès des courants marins. On distingue le plancton végétal et principalement photosynthétique, "le phytoplancton", du plancton animal hétérotrophe, "le zooplancton". Au cours des dernières décennies, de nombreuses études ont documenté une croissance de l'abondance et de la distribution spatiale du zooplancton gélatineux à travers diverses régions. Même si le terme "gélification" des océans doit être utilisé avec beaucoup de précaution, des régions comme la mer Méditerranée montre une constante augmentation des méduses au cours de ces 40 dernières années. L'espèce Pelagia noctiluca (Forsskål, 1775) est considérée comme étant la méduse la plus abondante du bassin méditerranéen depuis les années 70. Du fait de leur présence massive dans cette région, il est primordial d'évaluer précisément l'impact de P. noctiluca à la fois sur les cycles biogéochimiques et sur la structuration des écosystèmes pélagiques. Pour cela, les deux processus majeurs de transfert de matière dans l'écosystème doivent être étudiés : la séquestration de carbone via la pompe biologique et le transfert de carbon au travers des réseaux trophiques. Cette thèse s'articule autour de trois axes majeurs: (i) réaliser un premier bilan de l'export de carbone organique particulaire (POCtotal) et dissous (DOC) en mer Méditerranée, (ii) construire un modèle écophysiologique de P. noctiluca pour déterminer la contribution de cette méduse à la pompe biologique, et (iii) évaluer le niveau trophique de P. noctiluca et son potentiel impact sur les niveaux trophiques inférieurs.

The Gulf of Lions in the northwestern Mediterranean is one of the few sites around the world ocean exhibiting deep open‐ocean convection. Based on 6 year long (2009–2015) time series from a mooring in the convection region, shipborne measurements from repeated cruises, from 2012 to 2015, and glider measurements, we report evidence of bottom thick nepheloid layer formation, which is coincident with deep sediment resuspension induced by bottom‐reaching convection events. This bottom nepheloid layer, which presents a maximum thickness of more than 2000 m in the center of the convection region, probably results from the action of cyclonic eddies that are formed during the convection period and can persist within their core while they travel through the basin. The residence time of this bottom nepheloid layer appears to be less than a year. In situ measurements of suspended particle size further indicate that the bottom nepheloid layer is primarily composed of aggregates between 100 and 1000 µm in diameter, probably constituted of fine silts. Bottom‐reaching open ocean convection, as well as deep dense shelf water cascading that occurred concurrently some years, lead to recurring deep sediments resuspension episodes. They are key mechanisms that control the concentration and characteristics of the suspended particulate matter in the basin, and in turn affect the bathypelagic biological activity

During the SESAME EU FP6 project, all available particulate organic carbon (POC) data collected from drifting sediment trap and Underwater Vision Profiler deployments (INSU PROOF database, 1991–2011) were gathered in order to assess carbon export at the scale of the Mediterranean Sea. In this study, we observed that particle size, POC export, and the contribution of microphytoplankton to the phytoplankton community structure, all decreased following the west to east net primary production gradient. One the other hand, no clear longitudinal gradient was found regarding particle composition (C/N ratio or lipid content). The above longitudinal patterns were also observed at the seasonal scale from spring to summer in the northwestern subbasin. These observations suggest that particle size rather than organic matter composition controls fluxes of POC in the Mediterranean Sea. The comparison between POC and dissolved organic carbon (DOC) fluxes highlights the different time-scale of physicals vertical mechanisms and suggests that DOC flux can play an underestimated role in the supply of fresh carbon to the deep waters Mediterranean Sea. Indeed, DOC supply to deeper layers can be one order of magnitude larger than particle carbon flux but occurs in pulses when stratification breaks due to (i) deep-water formation, or (ii) winter mixing. In contrast, the vertical export of POC occurs throughout the year bringing weak, but almost continuous, energy to meso- and bathypelagic organisms.