The Northwestern Mediterranean Sea is undergoing rapid environmental changes driven by climate variability and intense anthropogenic pressure. To monitor and understand the long-term impacts on marine ecosystems, the Mediterranean Ocean Observing System for the Environment (MOOSE) program combines multidisciplinary observations, including physical, chemical, and biological data across temporal and spatial scales. This study presents a holistic assessment of planktonic communities across the Northwestern Mediterranean using integrated approaches—environmental genomics and high-resolution imaging—spanning all plankton size fractions and depths. Data collected during three MOOSE-GE cruises in 2017, 2018, and 2019 were analyzed to explore plankton diversity patterns in relation to oceanographic features. Plankton assemblages were primarily shaped by organism size and water column depth, with fractions of 0.2–3 and 3–180 µm in the surface and deep chlorophyll maximum layers showing the highest alpha diversity. Fractions > 64 µm were dominated by metazoans, particularly Arthropoda, whereas size classes collected by Niskin bottles were dominated by protists such as Syndiniales and Rhizaria. Differences among cruises and sampling periods were detected in Niskin bottle samples, especially for diatoms and dinoflagellates, while plankton tow samples exhibited less pronounced temporal variability. Physical clustering of stations revealed clear cross-shelf and basin-scale gradients, which aligned more closely with community structure at fine taxonomic resolution (OTU level) for small plankton. Integrating imaging with environmental genomic data enhanced the characterization of key taxa like Copepoda and Rhizaria, demonstrating the complementary strengths of each method. While imaging provided quantitative data, environmental genomics captured cryptic and morphologically indistinct taxa, emphasizing the value of molecular approaches for microbial plankton. This study highlights the critical importance of combining high-resolution molecular and imaging tools with detailed environmental context to unravel plankton biodiversity patterns. It demonstrates that depth, size, and taxonomic resolution are key dimensions for understanding community structure over time. The MOOSE program proves effective for ecosystem-scale monitoring, providing an essential foundation for future assessments of biogeochemical processes and ecosystem responses to climate change and human-induced alterations in the Mediterranean Sea.

Abstract Understanding factors controlling the biological carbon pump (BCP) at the regional scale is of major interest for better characterizing carbon sequestration into the deep ocean and, therefore, the ocean's role in climate regulation. This study focuses on high‐latitude marine regions, which are responsible for the majority of marine CO2 absorption. Using data from Biogeochemical‐Argo floats, a bioregionalization method was performed on 335 annual time series of chlorophyll a concentration and particulate backscattering coefficient, variables from which particulate organic carbon (POC) could be estimated. This analysis highlighted six regimes characterized by distinct seasonality in productivity, export, and transfer of small POC (<100 μm). Both hemispheres exhibited regimes with strong summer blooms and others with deep chlorophyll maxima. Across these regimes, variations in phytoplankton phenology and particle assemblages drove three distinct systems of BCP strength and efficiency for small particles. Despite these differences, processes such as gravitational sinking, the mixed layer pump, or particle fragmentation facilitated the export of small particles down to ∼1,000 m across all regions. This resulted in an average annual contribution of ∼10% of small particles to total organic carbon fluxes at depth, highlighting the role of small particles in long‐term carbon sequestration. These findings emphasize the need for future investigations into processes driving small‐particle carbon export and transfer in the mesopelagic zone at annual and seasonal scales.

Abstract. The Levantine Basin is an ultra-oligotrophic region and the formation site of the Levantine Intermediate Waters. For the first time, a high-resolution 3D coupled hydrodynamic-biogeochemical model, SYMPHONIE-Eco3MS, was used to investigate the seasonal and interannual variability of dissolved oxygen (O2) in the Levantine Basin and estimate its basin-wide budget for the period 2013–2020. Our results show that the simulated O2 concentrations align well with in situ data from research cruises and Argo floats. During winter, the surface layer is undersaturated in oxygen by up to 2 % across the entire basin, leading to atmospheric oxygen absorption. The model shows that on an annual scale, the basin acts as a net sink for atmospheric oxygen, with the Rhodes Gyre exhibiting uptake rates twice as high as the rest of the Levantine Basin. The surface layer also serves as a source of dissolved oxygen for intermediate depths, with 4.2 ± 1.1 mol m-2 year-1 of dissolved oxygen vertically transported. Oxygen is transported laterally into the basin from the Ionian Sea and exported towards the Aegean Sea, with winter heat loss intensity enhancing this lateral export at both surface and intermediate layers. The Levantine Basin alternates between autotrophic and heterotrophic states, depending on the intensity of winter surface heat loss. Spatially, the Rhodes Gyre emerges as a significant oxygen pump, contributing 41 % of the total oxygen production in the surface layer in the Levantine basin. This study highlights the need for further modeling studies on pluri-annual and multi-decadal scales to explore the interannual variability and evolution of the annual oxygen budget across the entire Eastern Basin, particularly in the context of climate change.

Abstract. Total alkalinity (AT) and dissolved inorganic carbon (CT) in the oceans are important properties to understand the ocean carbon cycle and its link with global change (ocean carbon sinks and sources, ocean acidification) and ultimately to find carbon-based solutions or mitigation procedures (marine carbon removal). We present an extended database (SNAPO-CO2; Metzl et al., 2024c) with 24 700 new additional data for the period 2002 to 2023. The full database now includes more than 67 000 AT and CT observations along with basic ancillary data (time and space location, depth, temperature, and salinity) in various oceanic regions obtained since 1993 mainly in the framework of French research projects. This includes both surface and water columns data acquired in open oceans, coastal zones, rivers, the Mediterranean Sea, and either from time series stations or punctual cruises. Most AT and CT data in this synthesis were measured from discrete samples using the same closed-cell potentiometric titration calibrated with certified reference material, with an overall accuracy of ±4 µmol kg−1 for both AT and CT. The same technique was used on board for underway measurements during cruises conducted in the southern Indian and Southern oceans. The AT and CT data from these cruises are also added to this synthesis. The data are provided in one dataset for the global ocean (https://doi.org/10.17882/102337, Metzl et al., 2024c) that offers a direct use for regional or global purposes, e.g., AT–salinity relationships, long-term CT estimates, constraint and validation of diagnostics CT and AT reconstructed fields, ocean carbon and coupled climate–carbon models simulations, and data derived from Biogeochemical Argo (BGC-Argo) floats. These data can also be used to calculate pH, fugacity of CO2 (fCO2), and other carbon system properties to derive ocean acidification rates or air–sea CO2 fluxes.

Since 2004, the Service facility SNAPO-CO2 (Service National d’Analyse des Paramètres Océaniques du CO2) housed by the LOCEAN laboratory (Paris, France) has been in charge for the analysis of Total Alkalinity (AT) and Total dissolved inorganic carbon (CT) of seawater samples on a series of cruises or ships of opportunity conducted in different regions in the frame of French projects. More than 44000 observations are synthetized in this work. Sampling was performed either from CTD-Rosette casts (Niskin bottles) or collected from the ship’s seawater supply (intake at about 5m depth). After completion of each cruise, discrete samples were returned back at LOCEAN laboratory and stored in a dark room at 4 °C before analysis generally within 2-3 months after sampling (sometimes within a week). AT and CT were analyzed simultaneously by potentiometric titration using a closed cell (Edmond, 1970). Certified Reference Materials (CRMs) provided by Pr. A. Dickson (Scripps Institution of Oceanography, San Diego, USA) were used to calibrate the measurements. The same instrumentation was used for underway measurements during OISO cruises (https://doi.org/10.18142/228) and OISO AT-CT data for 1998-2018 in the South Indian Ocean added in this synthesis. The synthesis is organized in two files (one for Global ocean and the Coastal Zones, one for the Mediterranean Sea) with the same format: Cruise name, Ship name, day, month, year, hour, minute, second, latitude, longitude, depth, AT (µmol/kg), Flag-AT, CT (µmol/kg), Flag-CT, Temperature (°C), Flag-Temp, Salinity (PSU), Flag-Salinity, nsample/cruise, nsample on file, sampling method.

The ATL2MED demonstration experiment involved two autonomous surface vehicles from Saildrone Inc. (SD) which travelled a route from the eastern tropical North Atlantic to the Adriatic Sea between October 2019 and July 2020 (see Table A6). This 9-month experiment in a transition zone between the temperate and tropical belts represents a major challenge for the SD's operations. The sensors on board were exposed to varying degrees of degradation and biofouling depending on the geographical area and season, which led to a deterioration in the measurements. As a result, some maintenance measures were required during the mission. We address the difficulty of correcting the data during a period of COVID-19 restrictions, which significantly reduced the number of discrete samples planned for the SD salinity and dissolved oxygen validation. This article details alternative correction methods for salinity and dissolved oxygen. Due to the lack of in situ data, model products have been used to correct the salinity data acquired by the SD instruments, and then the resulting corrected salinity was validated with data from fixed ocean stations, gliders, and Argo floats. In addition, dissolved oxygen data acquired from the SD instruments after correction using air oxygen measurements were tested and found to be coherent with the variation in oxygen concentrations expected from changes in temperature and phytoplankton abundance (from chlorophyll a). The correction methods are relevant and useful in situations where validation capabilities are lacking, which was the case during the ATL2MED demonstration experiment. For future experiments, a more frequent sample collection would improve the data qualification and validation.

Abstract. Total alkalinity (AT) and dissolved inorganic carbon (CT) in the oceans are important properties with respect to understanding the ocean carbon cycle and its link to global change (ocean carbon sinks and sources, ocean acidification) and ultimately finding carbon-based solutions or mitigation procedures (marine carbon removal). We present a database of more than 44 400 AT and CT observations along with basic ancillary data (spatiotemporal location, depth, temperature and salinity) from various ocean regions obtained, mainly in the framework of French projects, since 1993. This includes both surface and water column data acquired in the open ocean, coastal zones and in the Mediterranean Sea and either from time series or dedicated one-off cruises. Most AT and CT data in this synthesis were measured from discrete samples using the same closed-cell potentiometric titration calibrated with Certified Reference Material, with an overall accuracy of ±4 µmol kg−1 for both AT and CT. The data are provided in two separate datasets – for the Global Ocean and the Mediterranean Sea (https://doi.org/10.17882/95414, Metzl et al., 2023), respectively – that offer a direct use for regional or global purposes, e.g., AT–salinity relationships, long-term CT estimates, and constraint and validation of diagnostic CT and AT reconstructed fields or ocean carbon and coupled climate–carbon models simulations as well as data derived from Biogeochemical-Argo (BGC-Argo) floats. When associated with other properties, these data can also be used to calculate pH, the fugacity of CO2 (fCO2) and other carbon system properties to derive ocean acidification rates or air–sea CO2 fluxes.

Abstract The effect of mesoscale features on the distribution of planktonic organisms are well documented. Yet, the interaction between these spatial features and the temporal scale, which can result in sudden increases of the planktonic biomass, is less known and not described at high resolution. A permanent mesoscale front in the Ligurian Sea (north‐western Mediterranean) was repeatedly sampled between January and June 2021 using a SeaExplorer glider equipped with an Underwater Vision Profiler 6 (UVP6), a versatile in situ imager. Both plankton and particle distributions were resolved throughout the spring bloom to assess whether the front was a location of increased zooplankton concentration and whether it constrained particle distribution. Over the 5 months, the glider performed more than 5000 dives and the UVP6 collected 1.1 million images. We focused our analysis on shallow (300 m) transects, which gave a horizontal resolution of 900 m. About 13,000 images of planktonic organisms were retained. Ordination methods applied to particles and plankton concentrations revealed strong temporal variations during the bloom, with a succession of various zooplankton communities. Changes in particle abundance and size could be explained by changes in the plankton community. The front had a strong influence on particle distribution, while the signal was not as clear for plankton, probably because of the relatively small number of imaged organisms. This work confirms the need to sample both plankton and particles at fine scale to understand their interactions, a task for which automated in situ imaging is particularly adapted.

The presented pilot for the Synthesis Product for Ocean Time Series (SPOTS) includes data from 12 fixed ship-based time-series programs. The related stations represent unique open-ocean and coastal marine environments within the Atlantic Ocean, Pacific Ocean, Mediterranean Sea, Nordic Seas, and Caribbean Sea. The focus of the pilot has been placed on biogeochemical essential ocean variables: dissolved oxygen, dissolved inorganic nutrients, inorganic carbon (pH, total alkalinity, dissolved inorganic carbon, and partial pressure of CO2), particulate matter, and dissolved organic carbon. The time series used include a variety of temporal resolutions (monthly, seasonal, or irregular), time ranges (10-36 years), and bottom depths (80-6000 m), with the oldest samples dating back to 1983 and the most recent one corresponding to 2021. Besides having been harmonized into the same format (semantics, ancillary data, units), the data were subjected to a qualitative assessment in which the applied methods were evaluated and categorized. The most recently applied methods of the time-series programs usually follow the recommendations outlined by the Bermuda Time Series Workshop report (Lorenzoni and Benway, 2013), which is used as the main reference for "method recommendations by prevalent initiatives in the field". However, measurements of dissolved oxygen and pH, in particular, still show room for improvement. Additional data quality descriptors include precision and accuracy estimates, indicators for data variability, and offsets compared to a reference and widely recognized data product for the global ocean: the GLobal Ocean Data Analysis Project (GLODAP). Generally, these descriptors indicate a high level of continuity in measurement quality within time-series programs and a good consistency with the GLODAP data product, even though robust comparisons to the latter are limited. The data are available as (i) a merged comma-separated file that is compliant with the World Ocean Circulation Experiment (WOCE) exchange format and (ii) a format dependent on user queries via the Environmental Research Division's Data Access Program (ERDDAP) server of the Global Ocean Observing System (GOOS). The pilot increases the data utility, findability, accessibility, interoperability, and reusability following the FAIR philosophy, enhancing the readiness of biogeochemical time series. It facilitates a variety of applications that benefit from the collective value of biogeochemical time-series observations and forms the basis for a sustained time-series living data product, SPOTS, complementing relevant products for the global interior ocean carbon data (GLobal Ocean Data Analysis Project), global surface ocean carbon data (Surface Ocean CO2 Atlas; SOCAT), and global interior and surface methane and nitrous oxide data (MarinE MethanE and NiTrous Oxide product). Aside from the actual data compilation, the pilot project produced suggestions for reporting metadata, implementing quality control measures, and making estimations about uncertainty. These recommendations aim to encourage the community to adopt more consistent and uniform practices for analysis and reporting and to update these practices regularly. The detailed recommendations, links to the original time-series programs, the original data, their documentation, and related efforts are available on the SPOTS website. This site also provides access to the data product (DOI: https://doi.org/10.26008/1912/bco-dmo.896862.2, Lange et al., 2024) and ancillary data.

Abstract The Mediterranean Sea has been sampled irregularly by research vessels in the past, mostly by national expeditions in regional waters. To monitor the hydrographic, biogeochemical and circulation changes in the Mediterranean Sea, a systematic repeat oceanographic survey programme called Med-SHIP was recommended by the Mediterranean Science Commission (CIESM) in 2011, as part of the Global Ocean Ship-based Hydrographic Investigations Program (GO-SHIP). Med-SHIP consists of zonal and meridional surveys with different frequencies, where comprehensive physical and biogeochemical properties are measured with the highest international standards. The first zonal survey was done in 2011 and repeated in 2018. In addition, a network of meridional (and other key) hydrographic sections were designed: the first cycle of these sections was completed in 2016, with three cruises funded by the EU project EUROFLEETS2. This paper presents the physical and chemical data of the meridional and key transects in the Western and Eastern Mediterranean Sea collected during those cruises.

The effect of mesoscale features on the distribution of planktonic organisms are well documented. Yet, the interaction between these spatial features and the temporal scale, which can result in sudden increases of the planktonic biomass, is less known and not described at high resolution. A permanent mesoscale front in the Ligurian Sea (north‐western Mediterranean) was repeatedly sampled between January and June 2021 using a SeaExplorer glider equipped with an Underwater Vision Profiler 6 (UVP6), a versatile in situ imager. Both plankton and particle distributions were resolved throughout the spring bloom to assess whether the front was a location of increased zooplankton concentration and whether it constrained particle distribution. Over the 5 months, the glider performed more than 5000 dives and the UVP6 collected 1.1 million images. We focused our analysis on shallow (300 m) transects, which gave a horizontal resolution of 900 m. About 13,000 images of planktonic organisms were retained. Ordination methods applied to particles and plankton concentrations revealed strong temporal variations during the bloom, with a succession of various zooplankton communities. Changes in particle abundance and size could be explained by changes in the plankton community. The front had a strong influence on particle distribution, while the signal was not as clear for plankton, probably because of the relatively small number of imaged organisms. This work confirms the need to sample both plankton and particles at fine scale to understand their interactions, a task for which automated in situ imaging is particularly adapted.

Sustained time-series measurements are crucial to understand changes in oceanic carbonate chemistry. In the North Western Mediterranean Sea, the temporal evolution of the carbonate system is here investigated based on two 10-year time-series (between January 2010 and December 2019) of monthly carbonate parameters measurements at two sampling sites in the Ligurian Sea (ANTARES and DYFAMED). At seasonal timescale, the seawater partial pressure of CO 2 ( p CO 2 ) within the mixed layer is mostly driven by temperature at both sites, and biological processes as stated by the observed relationships between total inorganic carbon ( C T ), nitrate and temperature. This study suggests also that mixing and water masses advection could play a role in modulating the C T content. At decadal timescale, significant changes in ocean chemistry are observed with increasing trends in C T (+3.2 ± 0.9 µmol.kg −1 .a −1 – ANTARES; +1.6 ± 0.8 µmol.kg −1 .a −1 – DYFAMED), associated with increasing p CO 2 trends and decreasing trends in pH. The magnitude of the increasing trend in C T at DYFAMED is consistent with the increase in atmospheric p CO 2 and the anthropogenic carbon transport of water originating from the Atlantic Ocean, while the higher trends observed at the ANTARES site could be related to the hydrological variability induced by the variability of the Northern Current.

The effect of mesoscale features on the distribution of planktonic organisms are well documented. Yet, the interaction between these spatial features and the temporal scale, which can result in sudden increases of the planktonic biomass, is less known and not described at high resolution. We targeted a permanent mesoscale front in the Ligurian Sea (NW Mediterranean) that we repeatedly sampled between January and June 2021 using a SeaExplorer glider equipped with a UVP6, a versatile in situ imager. We aimed to resolve mesoscale distribution of plankton and particle distribution during the spring bloom, to assess whether the front was a location of increased concentration of zooplankton, and if it constrained the distribution of particles. During the 5 months, the glider conducted more than 5,000 dives and the UVP6 collected 1.1 million images. We focused our analysis on shallow (300 m) transects, which gave a horizontal resolution of 900 m. About 13,000 images of planktonic organisms were retained. Ordination methods applied to particles and plankton concentrations revealed contrasted periods during the bloom, in which changes in particle abundance and size could be explained by changes in the plankton community. The front had a strong influence on particle distribution, while the signal was not as clear for plankton, probably because of the relatively small number of imaged organisms. This work confirms the need to sample both plankton and particles at fine scale to understand their interaction, a task for which automated in situ imaging is particularly adapted.

The ocean is the main heat reservoir in Earth’s climate system, absorbing most of the top-of-the-atmosphere excess radiation. As the climate warms, anomalously warm and fresh ocean waters in the densest layers formed near Antarctica spread northward through the abyssal ocean, while successions of warming and cooling events are seen in the deep-ocean layers formed near Greenland. The abyssal warming and freshening expands the ocean volume and raises sea level. While temperature and salinity characteristics and large-scale circulation of upper 2000 m ocean waters are well monitored, the present ocean observing network is limited by sparse sampling of the deep ocean below 2000 m. Recently developed autonomous robotic platforms, Deep Argo floats, collect profiles from the surface to the seafloor. These instruments supplement satellite, Core Argo float, and ship-based observations to measure heat and freshwater content in the full ocean volume and close the sea level budget. Here, the value of Deep Argo and planned strategy to implement the global array are described. Additional objectives of Deep Argo may include dissolved oxygen measurements, and testing of ocean mixing and optical scattering sensors. The development of an emerging ocean bathymetry dataset using Deep Argo measurements is also described.

The Rhodes Gyre is a cyclonic persistent feature of the general circulation of the Levantine Basin in the eastern Mediterranean Sea. Although it is located in the most oligotrophic basin of the Mediterranean Sea, it is a relatively high primary production area due to strong winter nutrient supply associated with the formation of Levantine Intermediate Water. In this study, a 3D coupled hydrodynamic-biogeochemical model (SYMPHONIE/Eco3M-S) was used to characterize the seasonal and interannual variability of the Rhodes Gyre's ecosystem and to estimate an annual organic carbon budget over the 2013-2020 period. Comparisons of model outputs with satellite data and compiled in situ data from cruises and Biogeochemical-Argo floats revealed the ability of the model to reconstruct the main seasonal and spatial biogeochemical dynamics of the Levantine Basin. The model results indicated that during the winter mixing period, phytoplankton first progressively grow sustained by nutrient supply. Then, short episodes of convection driven by heat loss and wind events, favoring nutrient injections, organic carbon export, and inducing light limitation on primary production, alternate with short episodes of phytoplankton growth. The estimate of the annual organic carbon budget indicated that the Rhodes Gyre is an autotrophic area, with a positive net community production in the upper layer (0-150 m) amounting to 31.2 ± 6.9 gCm^-2yr^-1. Net community production in the upper layer is almost balanced over the 7-year period by physical transfers, (1) via downward export (16.8 ± 6.2 gCm^-2yr^-1) and (2) through lateral transport towards the surrounding regions (14.1 ± 2.1 gCm^-2yr^-1). The intermediate layer (150-400 m) also appears to be a source of organic carbon for the surrounding Levantine Sea (7.5 ± 2.8 gCm^-2yr^-1) mostly through the subduction of Levantine Intermediate Water following winter mixing. The Rhodes Gyre shows high interannual variability with enhanced primary production, net community production, and exports during years marked by intense heat losses and deep mixed layers. However, annual primary production appears to be only partially driven by winter vertical mixing. Based on our results, we can speculate that future increase of temperature and stratification could strongly impact the carbon fluxes in this region.

Aim The distribution of mesoplankton communities have been poorly studied at global scale, especially from in situ instruments. This study aims to (1) describe the global distribution of mesoplankton communities in relation with their environment and (2) assess the ability of various environmental-based ocean regionalisations to explain the distribution of these communities. Location Global ocean, 0-500 m depth. Time period 2008 - 2019 Major taxa studied 28 groups of large mesoplanktonic and macroplanktonic organ- isms, covering Metazoa, Rhizaria and Cyanobacteria. Methods From a global data set of 2500 vertical profiles making use of the Underwater Vision Profiler 5 (UVP5), an in situ imaging instrument, we studied the global distribu- tion of large (> 600 μm) mesoplanktonic organisms. Among the 6.8 million imaged ob- jects, 330,000 were large zooplanktonic organisms and phytoplankton colonies, the rest consisting of marine snow particles. Multivariate ordination (PCA) and clustering were used to describe patterns in community composition, while comparison with existing regionalisations was performed with regression methods (RDA). Results Within the observed size range, epipelagic plankton communities were Trichodesmium-enriched in the intertropical Atlantic, Copepoda-enriched at high latitudes and in upwelling areas, and Rhizaria-enriched in oligotrophic areas. In the mesopelagic layer, Copepoda-enriched communities were also found at high latitudes and in the At- lantic Ocean, while Rhizaria-enriched communities prevailed in the Peruvian upwelling system and a few mixed communities were found elsewhere. The comparison between the distribution of these communities and a set of existing regionalisations of the ocean suggested that the structure of plankton communities described above is mostly driven by basin-level environmental conditions. Main conclusions n both layers, three types of plankton communities emerged and seemed to be mostly driven by regional environmental conditions. This work sheds light on the role not only of metazoans, but also of unexpected large protists and cyanobacteria in structuring large mesoplankton communities.

Deep convection plays a key role in the circulation, thermodynamics, and biogeochemical cycles in the Mediterranean Sea, which is considered to be a hotspot of biodiversity and climate change. In the framework of the DEWEX (Dense Water Experiment) project, the seasonal and annual budgets of dissolved inorganic carbon in the deep-convection area of the northwestern Mediterranean Sea are investigated over the period September 2012–September 2013 using a 3D coupled physical–biogeochemical–chemical modeling approach. At the annual scale, we estimate that the northwestern Mediterranean Sea's deep-convection region was a moderate sink of 0.5 mol C m−2 yr−1 of CO2 for the atmosphere. The model results show the reduction of oceanic CO2 uptake during deep convection and its increase during the abrupt spring phytoplankton bloom following the deep-convection events. We highlight the major roles in the annual dissolved inorganic carbon budget of both the biogeochemical and physical fluxes, which amount to −3.7 and 3.3 mol C m−2 yr−1, respectively, and are 1 order of magnitude higher than the air–sea CO2 flux. The upper layer (from the surface to 150 m depth) of the northwestern deep-convection region gained dissolved inorganic carbon through vertical physical transport and, to a lesser extent, oceanic CO2 uptake, and it lost dissolved inorganic carbon through lateral transport and biogeochemical fluxes. The region, covering 2.5 % of the Mediterranean, acted as a source of dissolved inorganic carbon for the surface and intermediate water masses of the Balearic Sea and southwestern Mediterranean Sea and could represent up to 22 % and 11 %, respectively, of the CO2 exchanges with the Atlantic Ocean at the Strait of Gibraltar.

Challengerids, phaeogromids rhizarian protists, are emblematic protists of the deep sea but are also enigmatic as they occur in very low concentrations. In previous studies, we reported on temporal changes in abundance at a near-shore mesopelagic site, but only as part of sampling of the entire microplankton assemblage, not well suited for examining phaeogromids. Consequently, we turned to using a closing plankton net to provide material from large volumes of seawater thus allowing for more robust estimates of concentrations and material for observations of living cells, to our knowledge the first made. Here we report our results on the four most commonly occurring species: Challengeranium diadon, Challengereron willemoesii, Challengeria xiphodon and Euphysetta lucani. In contrast to our previous report, we found that changes in concentrations were not related to water column stratification, and the four species roughly co-varied with time. Observations of live cells revealed that all four species deploy tentacle-like pseudopods and also very large unstructured webs of fine pseudopods. The similarities in feeding webs suggest similar prey are exploited, and the similar temporal changes in abundances, suggest a common factor or factors (unknown at this time) govern their concentrations. Films of live cells are provided in supplementary files.

Intense glider monitoring was conducted in the Ligurian Sea for five months to capture the Net Community Production (NCP) variability in one of the most dynamic and productive regions of the Mediterranean Sea. Using the SeaExplorer glider technology, we were able to observe continuously from January to the end of May 2018 the physical and biogeochemical variables during the last period of intense convection observed in this region. High-frequency measurements from these gliders provided valuable information for determining dissolved O 2 (DO) concentrations between coastal and open sea waters. Our DO balance approach provided an estimate of NCP fluxes complemented by the prediction of air-sea CO 2 fluxes based on a neural network adapted to the Mediterranean Sea (CANYON-MED). Based on our NCP calculation method, our results show that the air-sea O 2 flux and DO inventory have contributed largely to the NCP variability. The NCP values also suggest that heterotrophic conditions were predominant in winter and became autotrophic in spring, with strong variability in coastal waters due to the occurrence of sub-mesoscale structures. Finally, CO 2 fluxes at the air-sea interface reveal that during the convection period, the central zone of the Ligurian Sea acted as a CO 2 sink from January to March with little impact on NCP fluxes counterbalanced by a thermal effect of seawater.

Autonomous and cabled platforms are revolutionizing our understanding of ocean systems by providing 4D monitoring of the water column, thus going beyond the reach of ship-based surveys and increasing the depth of remotely sensed observations. However, very few commercially available sensors for such platforms are capable of monitoring large particulate matter (100-2000 μm) and plankton despite their important roles in the biological carbon pump and as trophic links from phytoplankton to fish. Here, we provide details of a new, commercially available scientific camera-based particle counter, specifically designed to be deployed on autonomous and cabled platforms: the Underwater Vision Profiler 6 (UVP6). Indeed, the UVP6 camera-and-lighting and processing system, while small in size and requiring low power, provides data of quality comparable to that of previous much larger UVPs deployed from ships. We detail the UVP6 camera settings, its performance when acquiring data on aquatic particles and plankton, their quality control, analysis of its recordings, and streaming from in situ acquisition to users. In addition, we explain how the UVP6 has already been integrated into platforms such as BGC-Argo floats, gliders and long-term mooring systems (autonomous platforms). Finally, we use results from actual deployments to illustrate how UVP6 data can contribute to addressing longstanding questions in marine science, and also suggest new avenues that can be explored using UVP6-equipped autonomous platforms.

Climatic changes and interannual variability in the Mediterranean overturning circulation are crucially linked to dense water formation in the Levantine Sea, namely the Levantine Intermediate Water whose formation zone, comprising multiple and intermittent sources, extends over fluctuating pathways. To probe into the variability of this water formation and spreading, a unique dataset was collected during the winter of 2019 in the western Levantine Sea, via oceanographic cruises, profiling floats and a glider, at a spatio-temporal distribution suited to resolve mesoscale circulation features and intermittent convection events. This study highlights the competition between two source regions, the Cretan Sea and the Rhodes Cyclonic Gyre, to supply the Mediterranean overturning circulation in Levantine Intermediate Water. The Cretan source was estimated as the most abundant, supported by increasingly saltier water masses coming from the Levantine Sea under the pumping effect of a water deficit caused by strong western outflow toward the Ionian Sea.

Zooplankton plays a major role in ocean food webs and biogeochemical cycles, and provides major ecosystem services as a main driver of the biological carbon pump and in sustaining fish communities. Zooplankton is also sensitive to its environment and reacts to its changes. To better understand the importance of zooplankton, and to inform prognostic models that try to represent them, spatially-resolved biomass estimates of key plankton taxa are desirable. In this study we predict, for the first time, the global biomass distribution of 19 zooplankton taxa (1-50 mm Equivalent Spherical Diameter) using observations with the Underwater Vision Profiler 5, a quantitative in situ imaging instrument. After classification of 466,872 organisms from more than 3,549 profiles (0-500 m) obtained between 2008 and 2019 throughout the globe, we estimated their individual biovolumes and converted them to biomass using taxa-specific conversion factors. We then associated these biomass estimates with climatologies of environmental variables (temperature, salinity, oxygen, etc.), to build habitat models using boosted regression trees. The results reveal maximal zooplankton biomass values around 60°N and 55°S as well as minimal values around the oceanic gyres. An increased zooplankton biomass is also predicted for the equator. Global integrated biomass (0-500 m) was estimated at 0.403 PgC. It was largely dominated by Copepoda (35.7%, mostly in polar regions), followed by Eumalacostraca (26.6%) Rhizaria (16.4%, mostly in the intertropical convergence zone). The machine learning approach used here is sensitive to the size of the training set and generates reliable predictions for abundant groups such as Copepoda (R2 ≈ 20-66%) but not for rare ones (Ctenophora, Cnidaria, R2 < 5%). Still, this study offers a first protocol to estimate global, spatially resolved zooplankton biomass and community composition from in situ imaging observations of individual organisms. The underlying dataset covers a period of 10 years while approaches that rely on net samples utilized datasets gathered since the 1960s. Increased use of digital imaging approaches should enable us to obtain zooplankton biomass distribution estimates at basin to global scales in shorter time frames in the future.

Using Argo profiling floats, cruises and mooring data, we reconstructed the dissolved oxygen (O2) dynamics in the Gulf of Lion and the Ligurian Sea, with a focus on the intermediate waters. By applying the CANYON-MED neural network-based method on the large network of O2-equipped Argo floats we derived nutrients and carbonate system variables in the Gulf of Lion and the Ligurian Sea at different depths in the water column and derived trends over the 2012-2020 period. In these waters, the O2 minimum is strongly affected by the intermittent convection process, and the two areas show dissimilar responses to the mixing events. In the absence of deep convection events, the O2-depleted layer tends to spread vertically and intensify even more so in the Ligurian than in the Gulf of Lion. In both areas, over the 2012-2020 period, nutrients increase overall in deep layers, with a concomitant impact on nutrient molar ratios tending toward an increase in P-limitation. Acidification estimates derived in different layers of the water column show an overall increase in dissolved inorganic carbon and a concurrent pH decrease. These trends were strongly affected by convection events slowing down the overall acidification trend.

Marine particles of different nature are found throughout the global ocean. The term “marine particles” describes detritus aggregates and fecal pellets as well as bacterioplankton, phytoplankton, zooplankton and nekton. Here, we present a global particle size distribution dataset obtained with several Underwater Vision Profiler 5 (UVP5) camera systems. Overall, within the 64 µm to about 50 mm size range covered by the UVP5, detrital particles are the most abundant component of all marine particles; thus, measurements of the particle size distribution with the UVP5 can yield important information on detrital particle dynamics. During deployment, which is possible down to 6000 m depth, the UVP5 images a volume of about 1 L at a frequency of 6 to 20 Hz. Each image is segmented in real time, and size measurements of particles are automatically stored. All UVP5 units used to generate the dataset presented here were inter-calibrated using a UVP5 high-definition unit as reference. Our consistent particle size distribution dataset contains 8805 vertical profiles collected between 19 June 2008 and 23 November 2020. All major ocean basins, as well as the Mediterranean Sea and the Baltic Sea, were sampled. A total of 19 % of all profiles had a maximum sampling depth shallower than 200 dbar, 38 % sampled at least the upper 1000 dbar depth range and 11 % went down to at least 3000 dbar depth. First analysis of the particle size distribution dataset shows that particle abundance is found to be high at high latitudes and in coastal areas where surface productivity or continental inputs are elevated. The lowest values are found in the deep ocean and in the oceanic gyres. Our dataset should be valuable for more in-depth studies that focus on the analysis of regional, temporal and global patterns of particle size distribution and flux as well as for the development and adjustment of regional and global biogeochemical models. The marine particle size distribution dataset (Kiko et al., 2021) is available at https://doi.org/10.1594/PANGAEA.924375.

ILICO, a French Research Infrastructure (RI) for Coastal Ocean and Nearshore Observations is a notable example of national and pan-institutional efforts to expand knowledge of the complex processes at work within the critical coastal zone in line with the European Ocean Observing System perspective. Providing a forum for its community to work together on priority issues is a challenge, and ILICO’s organizational structure and governance are designed accordingly. Future challenges for this RI include the question of whether France’s original model of combining both land and nearshore in its study of the coastal domain is transferable to the pan-European context and how far we can go in integrating overseas and ultramarine issues.

MOOSE is a multidisciplinary integrated Ocean observing system part of the French national Research Infrastructure for coastal ocean and seashore observations (ILICO-RI). It was established in 2010 to monitor the Northwestern Mediterranean Sea in the context of rapid climate change and its impacts on marine ecosystems.

The north-western Mediterranean deep convection plays a crucial role in the general circulation and biogeochemical cycles of the Mediterranean Sea. The DEWEX (DEnse Water EXperiment) project aimed to better understand this role through an intensive observation platform combined with a modelling framework. We developed a three-dimensional coupled physical and biogeochemical model to estimate the cycling and budget of dissolved oxygen in the entire north-western Mediterranean deep-convection area over the period September 2012 to September 2013. After showing that the simulated dissolved oxygen concentrations are in a good agreement with the in situ data collected from research cruises and Argo floats, we analyse the seasonal cycle of the air–sea oxygen exchanges, as well as physical and biogeochemical oxygen fluxes, and we estimate an annual oxygen budget. Our study indicates that the annual air-to-sea fluxes in the deep-convection area amounted to 20 molm−2yr−1. A total of 88 % of the annual uptake of atmospheric oxygen, i.e. 18 mol m−2, occurred during the intense vertical mixing period. The model shows that an amount of 27 mol m−2 of oxygen, injected at the sea surface and produced through photosynthesis, was transferred under the euphotic layer, mainly during deep convection. An amount of 20 mol m−2 of oxygen was then gradually exported in the aphotic layers to the south and west of the western basin, notably, through the spreading of dense waters recently formed. The decline in the deep-convection intensity in this region predicted by the end of the century in recent projections may have important consequences on the overall uptake of atmospheric oxygen in the Mediterranean Sea and on the oxygen exchanges with the Atlantic Ocean, which appear necessary to better quantify in the context of the expansion of low-oxygen zones.

EMSO is a distributed Research Infrastructure currently comprising nine Regional Facilities (RFs) and three shallow water test sites, strategically located all the way from the southern entrance of the Arctic Ocean across to the North Atlantic through the Mediterranean to the Black Sea. Since the beginning of 2021 Norway has been integrated as a new EMSO ERIC member, extending the geographical coverage to the Nordic Sea and the Arctic. EMSO’s extension will benefi t from an experienced team managing moored observatories, ocean gliders and the Mohn Ridge Seafl oor and Water Column Observatory.

The seasonal variability of the carbonate system in the eastern Mediterranean Sea (EMed) was investigated based on discrete total alkalinity (A T ), total dissolved inorganic carbon (C T ), and pH measurements collected during three cruises around Crete between June 2018 and March 2019. This study presents a detailed description of this new carbonate chemistry dataset in the eastern Mediterranean Sea. We show that the North Western Levantine Basin (NWLB) is unique in terms of range of A T variation vs. C T variation in the upper water column over an annual cycle. The reasons for this singularity of the NWLB can be explained by the interplay between strong evaporation and the concomitant consumption of C T by autotrophic processes. The high range of A T variations, combined to temperature changes, has a strong impact on the variability of the seawater p CO 2 ( p CO 2 S W ). Based on Argo float data, an entire annual cycle for p CO 2 S W in the NWLB has been reconstructed in order to estimate the temporal sequence of the potential “source” and “sink” of atmospheric CO 2 . By combining this dataset with previous observations in the NWLB, this study shows a significant ocean acidification and a decrease in the oceanic surface pH T 25 of −0.0024 ± 0.0004 pH T 25 units.a –1 . The changes in the carbonate system are driven by the increase of atmospheric CO 2 but also by unexplained temporal changes in the surface A T content. If we consider that the EMed will, in the future, encounter longer, more intense and warmer summer seasons, this study proposes some perspectives on the carbonate system functioning of the “future” EMed.

In this paper, we outline the need for a coordinated international effort toward the building of an open-access Global Ocean Oxygen Database and ATlas (GO$_2$DAT) complying with the FAIR principles (Findable, Accessible, Interoperable, and Reusable). GO$_2$DAT will combine data from the coastal and open ocean, as measured by the chemical Winkler titration method or by sensors (e.g., optodes, electrodes) from Eulerian and Lagrangian platforms (e.g., ships, moorings, profiling floats, gliders, ships of opportunities, marine mammals, cabled observatories). GO$_2$DAT will further adopt a community-agreed, fully documented metadata format and a consistent quality control (QC) procedure and quality flagging (QF) system. GO$_2$DAT will serve to support the development of advanced data analysis and biogeochemical models for improving our mapping, understanding and forecasting capabilities for ocean O$_2$ changes and deoxygenation trends. It will offer the opportunity to develop quality-controlled data synthesis products with unprecedented spatial (vertical and horizontal) and temporal (sub-seasonal to multi-decadal) resolution. These products will support model assessment, improvement and evaluation as well as the development of climate and ocean health indicators. They will further support the decision-making processes associated with the emerging blue economy, the conservation of marine resources and their associated ecosystem services and the development of management tools required by a diverse community of users (e.g., environmental agencies, aquaculture, and fishing sectors). A better knowledge base of the spatial and temporal variations of marine O$_2$ will improve our understanding of the ocean O$_2$ budget, and allow better quantification of the Earth’s carbon and heat budgets. With the ever-increasing need to protect and sustainably manage ocean services, GO$_2$DAT will allow scientists to fully harness the increasing volumes of O$_2$ data already delivered by the expanding global ocean observing system and enable smooth incorporation of much higher quantities of data from autonomous platforms in the open ocean and coastal areas into comprehensive data products in the years to come. This paper aims at engaging the community (e.g., scientists, data managers, policy makers, service users) toward the development of GO$_2$DAT within the framework of the UN Global Ocean Oxygen Decade (GOOD) program recently endorsed by IOC-UNESCO. A roadmap toward GO$_2$DAT is proposed highlighting the efforts needed (e.g., in terms of human resources).

The study of the oceanic carbonate system is linked to two important environmental issues: ocean CO$_2$ uptake and ocean acidification and its impact on organisms, ecosystems and ecosystem services. This chapter mainly focuses on the seasonal cycles and long‐term trends of the ocean carbonate system based on a synthesis of data collected in the Ligurian Sea from 1998 to 2016. In addition to the effect of potential T (theta) on CO$_2$ solubility, the distribution of dissolved inorganic carbon CT in the water column is driven by the antagonistic effects of the biological carbon pump that increases the vertical gradient of CT (lowering CT at the surface and increasing it in the ocean interior) and the exchange of CO$_2$ at the air–sea interface. The chapter also presents the seasonal cycle of the carbonate system and ancillary variables in the surface water.

The Mediterranean Sea is a hotspot for climate change, and recent studies have reported its intense warming and salinification. In this study, we use an outstanding dataset relying mostly on glider endurance lines but also on other platforms to track these trends in the northwestern Mediterranean where deep convection occurs. Thanks to a high spatial coverage and a high temporal resolution over the period 2007-2017, we observed the warming (+0.06 [Formula: see text]C year[Formula: see text]) and salinification (+0.012 year[Formula: see text]) of Levantine Intermediate Water (LIW) in the Ligurian Sea. These rates are similar to those reported closer to its formation area in the Eastern Mediterranean Sea. Further downstream, in the Gulf of Lion, the intermediate heat and salt content were exported to the deep layers from 2009 to 2013 thanks to deep convection processes. In 2014, a LIW step of +0.3 [Formula: see text]C and +0.08 in salinity could be observed concomitant with a weak winter convection. Warmer and more saline LIW subsequently accumulated in the northwestern basin in the absence of intense deep convective winters until 2018. Deep stratification below the LIW thus increased, which, together with the air-sea heat fluxes intensity, constrained the depth of convection. A key prognostic indicator of the intensity of deep convective events appears to be the convection depth of the previous year.

A regional neural network-based method, "CANYON-MED" is developed to estimate nutrients and carbonate system variables specifically in the Mediterranean Sea over the water column from pressure, temperature, salinity, and oxygen together with geolocation and date of sampling. Six neural network ensembles were developed, one for each variable (i.e., three macronutrients: nitrates (NO − 3), phosphates (PO 3− 4) and silicates (SiOH 4), and three carbonate system variables: pH on the total scale (pH T), total alkalinity (A T), and dissolved inorganic carbon or total carbon (C T), trained using a specific quality-controlled dataset of reference "bottle" data in the Mediterranean Sea. This dataset is representative of the peculiar conditions of this semi-enclosed sea, as opposed to the global ocean. For each variable, the neural networks were trained on 80% of the data chosen randomly and validated using the remaining 20%. CANYON-MED retrieved the variables with good accuracies (Root Mean Squared Error): 0.73 µmol.kg −1 for NO − 3 , 0.045 µmol.kg −1 for PO 3− 4 and 0.70 µmol.kg −1 for Si(OH) 4 , 0.016 units for pH T , 11 µmol.kg −1 for A T and 10 µmol.kg −1 for C T. A second validation on the ANTARES independent time series confirmed the method's applicability in the Mediterranean Sea. After comparison to other existing methods to estimate nutrients and carbonate system variables, CANYON-MED stood out as the most robust, using the aforementioned inputs. The application of CANYON-MED on the Mediterranean Sea data from autonomous observing systems (integrated network of Biogeochemical-Argo floats, Eulerian moorings and ocean gliders measuring hydrological properties together with oxygen concentration) could have a wide range of applications. These include data quality control or filling gaps in time series, as well as biogeochemical data assimilation and/or the initialization and validation of regional biogeochemical models still lacking crucial reference data. Matlab and R code are available at https:// github.com/MarineFou/CANYON-MED/.

The deep sea has long been a mysterious and attractive habitat for protistologists. However logistical difficulties severely limit sampling opportunities. Consequently, our knowledge of the protists in the deep sea, (arguably the largest habitat on earth), is relatively sparse. Here we present a unique time-series concerning 3 different protist taxa that share only the characteristics of being relatively large, robust to sampling, and easily identifiable to species level using light microscopy: tintinnid ciliates, phaeogromid cercozoans (e.g. Challengerids) and amphisolenid dinoflagellates. We sampled a near-shore deep water site in the N.W. Mediterranean Sea at 250 m depth over a two-year period at approximately weekly intervals from January 2017 to December 2018. To our knowledge, no previous studies have employed sampling on a similar time scale. We found taxa that appear to be restricted to deep waters, distinct seasonal patterns of abundance in some taxa, and in others non-seasonal successional patterns. Based on data from sampling following a flash flood event, the Challengerid population appeared to respond positively to a pulse of terrigenous input. Some of the distinct mesopelagic tintinnid ciliates and amphisolinid dinoflagellates were also found in 2 samples from the North Atlantic mesopelagic gathered from near the Azores Islands in September 2018. We conclude that there are a variety of protist taxa endemic to the mesopelagic, that the populations are dynamic, and they may be widely distributed in the deep waters of the world ocean.

The Mediterranean community represented in this paper is the result of more than 30 years of EU and nationally funded coordination, which has led to key contributions in science concepts and operational initiatives. Together with the establishment of operational services, the community has coordinated with universities, research centers, research infrastructures and private companies to implement advanced multi-platform and integrated observing and forecasting systems that facilitate the advancement of operational services, scientific achievements and mission-oriented innovation. Thus, the community can respond to societal challenges and stakeholders needs, developing a variety of fit-for-purpose services such as the Copernicus Marine Service. The combination of state-of-the-art observations and forecasting provides new opportunities for downstream services in response to the needs of the heavily populated Mediterranean coastal areas and to climate change. The challenge over the next decade is to sustain ocean observations within the research community, to monitor the variability at small scales, e.g., the mesoscale/submesoscale, to resolve the sub-basin/seasonal and inter-annual variability in the circulation, and thus establish the decadal variability, understand and correct the model-associated biases and to enhance model-data integration and ensemble forecasting for uncertainty estimation. Better knowledge and understanding of the level of Mediterranean variability will enable a subsequent evaluation of the impacts and mitigation of the effect of human activities and climate change on the biodiversity and the ecosystem, which will support environmental assessments and decisions. Further challenges include extending the science-based added-value products into societal relevant downstream services and engaging with communities to build initiatives that will contribute to the 2030 Agenda and more specifically to SDG14 and the UN's Decade of Ocean Science for sustainable development, by this contributing to bridge the science-policy gap. The Mediterranean observing and forecasting capacity was built on the basis of community best practices in monitoring and modeling, and can serve as a basis for the development of an integrated global ocean observing system.

The oceans play a key role in global issues such as climate change, food security, and human health. Given their vast dimensions and internal complexity, efficient monitoring and predicting of the planet’s ocean must be a collaborative effort of both regional and global scale. A first and foremost requirement for such collaborative ocean observing is the need to follow well-defined and reproducible methods across activities: from strategies for structuring observing systems, sensor deployment and usage, and the generation of data and information products, to ethical and governance aspects when executing ocean observing. To meet the urgent, planet-wide challenges we face, methods across all aspects of ocean observing should be broadly adopted by the ocean community and, where appropriate, should evolve into “Ocean Best Practices.” While many groups have created best practices, they are scattered across the Web or buried in local repositories and many have yet to be digitized. To reduce this fragmentation, we introduce a new open access, permanent, digital repository of best practices documentation (oceanbestpractices.org) that is part of the Ocean Best Practices System (OBPS). The new OBPS provides an opportunity space for the centralized and coordinated improvement of ocean observing methods. The OBPS repository employs user-friendly software to significantly improve discovery and access to methods. The software includes advanced semantic technologies for search capabilities to enhance repository operations. In addition to the repository, the OBPS also includes a peer reviewed journal research topic, a forum for community discussion and a training activity for use of best practices. Together, these components serve to realize a core objective of the OBPS, which is to enable the ocean community to create superior methods for every activity in ocean observing from research to operations to applications that are agreed upon and broadly adopted across communities. Using selected ocean observing examples, we show how the OBPS supports this objective. This paper lays out a future vision of ocean best practices and how OBPS will contribute to improving ocean observing in the decade to come.

The OceanGliders program started in 2016 to support active coordination and enhancement of global glider activity. OceanGliders contributes to the international efforts of the Global Ocean Observation System (GOOS) for Climate, Ocean Health, and Operational Services. It brings together marine scientists and engineers operating gliders around the world: (1) to observe the long-term physical, biogeochemical, and biological ocean processes and phenomena that are relevant for societal applications; and, (2) to contribute to the GOOS through real-time and delayed mode data dissemination. The OceanGliders program is distributed across national and regional observing systems and significantly contributes to integrated, multi-scale and multi-platform sampling strategies. OceanGliders shares best practices, requirements, and scientific knowledge needed for glider operations, data collection and analysis. It also monitors global glider activity and supports the dissemination of glider data through regional and global databases, in real-time and delayed modes, facilitating data access to the wider community. OceanGliders currently supports national, regional and global initiatives to maintain and expand the capabilities and application of gliders to meet key global challenges such as improved measurement of ocean boundary currents, water transformation and storm forecast.

The Mediterranean Ocean Observing System for the Environment (MOOSE) network integrates a range of platforms to detect and identify long-term environmental anomalies.

Fixed point observatories in the northwestern Mediterranean Sea have a major contribution in monitoring physical and biogeochemical variables in the region. The capability of recording long-term, high quality time-series, using smart sensors, upgrades scientific knowledge regarding sea processes sensitive to climate change. Existing open sea multi-parametric moorings are located in the key areas where dynamic processes (e.g. convection, ventilation) and bio-regions (from high bloom to intermittent regimes) drive biogeochemical content that are essential to the carbon pump and the marine ecosystem (nutrients, oxygen, pH, pCO2). For the last 5 years, new biogeochemical sensors (O2, pCO2 and pH) have been integrated in the open sea fixed moorings (ERIC EMSO and others), on gliders and Argo floats (MOOSE network) in this region to deliver integrated data relevant for marine environmental studies and monitoring services. We will present here the last biogeochemical O2, pCO2 and pH time series that could be used to derive the net air-sea CO2 flux and to estimate the acidification trend in the northwestern Mediterranean Sea, a crucial region for ventilation and anthropogenic CO2 invasion.

Is there a mesopelagic protist fauna composed of species different from that of the overlying surface community? Does the mesopelagic community show seasonal changes in abundances and species composition? We addressed these questions by considering three distinct groups in which species identification is relatively unambiguous: tintinnid ciliates, phaeodarian radiolarians, and amphisolenid dinoflagellates. We sampled weekly at 250 m and 30 m depth from January to June a deep-water coastal site characterized by seasonal changes in water column structure; notably, in winter the mixed layer extends down into mesopelagic depths. We found a deep-water community of tintinnid ciliates comprised of forms apparently restricted to deep waters and species also found in the surface layer. This latter group was dominant during the winter mixis period when tintinnid concentrations were highest and subsequently declined with water column stratification. Phaeodarian radiolarians and the amphisolenid dinoflagellates were regularly found in deep samples but were largely absent from surface water samples and showed distinct patterns in the mesopelagic. Phaeodarian radiolarians declined with water column mixing and then increased in concentration with water column stratification whilst amphisolenid dinoflagellates concentrations showed no pattern but species composition varied. We conclude that for all three protists groups there appear to be both distinct mesopelagic forms and seasonal patterns.

To understand and predict the physical, chemical, and biological processes at play in coastal and nearshore marine areas requires an integrated, interdisciplinary approach. The case study of the French structuration of coastal ocean and nearshore observing systems provides an original overview on a federative research infrastructure named ILICO. It is a notable example of national structuration and pan-institution efforts to investigate the forefront of knowledge on the processes at work within the critical coastal zone. ILICO comprises, in a pluridisciplinary approach, eight distributed network-systems of observation and data analysis that are accredited and financially supported by French research institutions and the French Ministry for Higher Education, Research, and Innovation. ILICO observation points are implemented along metropolitan and overseas French coasts, where coastline dynamics, sea level evolution, physical and biogeochemical water properties, coastal water dynamics, phytoplankton composition, and health of coral reefs are monitored in order to address a wide range of scientific questions. To give an overview of the diversity and potential of the observations carried out, this paper offers a detailed presentation of three constituting networks: Service Observation en Milieu LITtoral (SOMLIT), with homogeneous sampling strategies, DYNALIT, with heterogeneous sampling strategies adapted to different environments, and Mediterranean Ocean Observing System for the Environment (MOOSE), an integrated, pluri-disciplinary coastal/offshore regional observatory in the northwestern Mediterranean Sea. ILICO was conceived using a European framework. It addresses the great challenges of the next decade in terms of sustainability, cost-efficiency, interoperability, and innovation. This paper emphasizes the added-value of federating these systems, and highlights some recommendations for the future.

An accurate understanding of the biogeochemistry of dissolved phosphate pool in the upper waters of P-depleted oceanic regions is constrained by the low sensitivity of routine phosphate measurements. In this study, by using the sensitive Liquid Waveguide Capillary Cell method, we report the first extensive cross-basin survey of nanomolar dissolved inorganic phosphate (DIP) and dissolved organic phosphate (DOP) concentration in P-depleted surface waters of the Mediterranean Sea during the stratification period. In the north western Mediterranean Sea (NWMS), DIP above the mixed layer depth (MLD) ranged between 4.9 and 26.5 nM. Along an E-W transect crossing Ionian and Tyrrhenian Seas (E-W transect), DIP above the MLD was lower, ranging between 0.9 and 11.4 nM. Contrarily to the traditional view of a depleted and invariant surface dissolved phosphate pool, a significant vertical variability of DIP and DOP was revealed in upper waters. A positive gradient of DIP was observed above the phosphacline, between the MLD and the deep chlorophyll maximum (DCM) depth, suggesting a potential diffusion of new phosphate to near-surface waters, even under stratified conditions. Interestingly, despite this apparent DIP availability, a significant negative gradient of DOP concentration was observed in the same layer. Finally, the positive gradient in DIP coincided with a significant increase in N:P ratio, suggesting a higher rate of increase of N than of P. The results obtained in this study indicate that acquiring nanomolar DIP data is a sine qua non condition for the comprehension and prediction of the biogeochemical functioning of P-depleted oceanic regions, such as the Mediterranean Sea.

We report on data from an oceanographic cruise, covering western, central and eastern parts of the Mediterranean Sea, on the French research vessel Tethys 2 in May 2015. This cruise was fully dedicated to the maintenance and the metrological verification of a biogeochemical observing system based on a fleet of BGC-Argo floats. During the cruise, a comprehensive data set of parameters sensed by the autonomous network was collected. The measurements include ocean currents, seawater salinity and temperature, and concentrations of inorganic nutrients, dissolved oxygen and chlorophyll pigments. The analytical protocols and data processing methods are detailed, together with a first assessment of the calibration state for all the sensors deployed during the cruise.

The fate of the organic matter (OM) produced by marine life controls the major biogeochemical cycles of the Earth's system. The OM produced through photosynthe-sis is either preserved, exported towards sediments or degraded through remineralisation in the water column. The productive eastern boundary upwelling systems (EBUSs) associated with oxygen minimum zones (OMZs) would be expected to foster OM preservation due to low O 2 conditions. But their intense and diverse microbial activity should enhance OM degradation. To investigate this contradiction, sediment traps were deployed near the oxycline and in the OMZ core on an instrumented moored line off Peru. Data provided high-temporal-resolution O 2 series charac-terising two seasonal steady states at the upper trap: sub-oxic ([O 2 ] < 25 µmol kg −1) and hypoxic-oxic (15 < [O 2 ] < 160 µmol kg −1) in austral summer and winter-spring, respectively. The OMZ vertical transfer efficiency of particulate organic carbon (POC) between traps (T eff) can be classi-Published by Copernicus Publications on behalf of the European Geosciences Union. 5094 M. Bretagnon et al.: Modulation of the vertical particle transfer efficiency fied into three main ranges (high, intermediate, low). These different T eff ranges suggest that both predominant preservation (high T eff > 50 %) and remineralisation (intermediate T eff 20 < 50 % or low T eff < 6 %) configurations can occur. An efficient OMZ vertical transfer (T eff > 50 %) has been reported in summer and winter associated with extreme limitation in O 2 concentrations or OM quantity for OM degradation. However, higher levels of O 2 or OM, or less refractory OM, at the oxycline, even in a co-limitation context, can decrease the OMZ transfer efficiency to below 50 %. This is especially true in summer during intraseasonal wind-driven oxygenation events. In late winter and early spring, high oxy-genation conditions together with high fluxes of sinking particles trigger a shutdown of the OMZ transfer (T eff < 6 %). Transfer efficiency of chemical elements composing the majority of the flux (nitrogen, phosphorus, silica, calcium car-bonate) follows the same trend as for carbon, with the lowest transfer level being in late winter and early spring. Regarding particulate isotopes, vertical transfer of δ 15 N suggests a complex pattern of 15 N impoverishment or enrichment according to T eff modulation. This sensitivity of OM to O 2 fluctuations and particle concentration calls for further investigation into OM and O 2-driven remineralisation processes. This should include consideration of the intermittent behaviour of OMZ towards OM demonstrated in past studies and climate projections .

Dissolved oxygen (O2) is a relevant tracer to interpret variations of both water mass properties in the open ocean and biological production in the surface layer of both coastal and open waters. Deep-water formation is very active in the northwestern Mediterranean Sea, where it influences intermediate and deep waters properties, nutrients replenishment and biological production. This study analyses, for the first time, the 20-year time series of monthly O2 concentrations at the DYFAMED long-term sampling site in the Ligurian Sea. Until the winters of 2005 and 2006, a thick and strong oxygen minimum layer was present between 200 and 1300 m because dense water formation was then local, episodic and of low intensity. In 2005-2006, intense and rapid deep convection injected 24 mol O2 m-2 between 350 and 2000 m from December 2005 to March 2006. Since this event, the deep layer has been mostly ventilated during winter time by newly formed deep water spreading from the Gulf of Lion 250 km to the west and by some local deep mixing in early 2010, 2012 and 2013. In the context of climate change, it is predicted that the intensity of deep convection will become weaker in the Mediterranean, which could potentially lead to hypoxia in intermediate and deep layers with substantial impact on marine ecosystems. With the exception of winters 2005 and 2006, the O2 changes in surface waters followed a seasonal trend that reflected the balance between air-sea O2 exchanges, changes in the depth of the mixed layer and phytoplankton net photosynthesis. We used the 20-year O2 time series to estimate monthly and annual net community production. The latter was 7.1 mol C m-2 yr-1, consistent with C-14 primary production determinations and sediment-trap carbon export fluxes at DYFAMED.

During winter 2012–2013, open‐ocean deep convection which is a major driver for the thermohaline circulation and ventilation of the ocean, occurred in the Gulf of Lions (Northwestern Mediterranean Sea) and has been thoroughly documented thanks in particular to the deployment of several gliders, Argo profiling floats, several dedicated ship cruises, and a mooring array during a period of about a year. Thanks to these intense observational efforts, we show that deep convection reached the bottom in winter early in February 2013 in a area of maximum 28 ± 3 10⁹ m². We present new quantitative results with estimates of heat and salt content at the subbasin scale at different time scales (on the seasonal scale to a 10 days basis) through optimal interpolation techniques, and robust estimates of the deep water formation rate of 2.0 ± 0.2 Sv. We provide an overview of the spatiotemporal coverage that has been reached throughout the seasons this year and we highlight some results based on data analysis and numerical modeling that are presented in this special issue. They concern key circulation features for the deep convection and the subsequent bloom such as Submesoscale Coherent Vortices (SCVs), the plumes, and symmetric instability at the edge of the deep convection area.

In June 2013, a glider equipped with oxygen and fluorescence sensors has been used to extensively sample an anticyclonic Submesoscale Coherent Vortex (SCV) in the Ligurian Sea (NW Mediterranean Sea). Those measurements are complemented by full‐depth CTD casts (T, S, and oxygen) and water samples documenting nutrients and phytoplankton pigments within the SCV and outside. The SCV has a very homogeneous core of oxygenated waters between 300 and 1200 m formed 4.5 months earlier during the winter deep convection event. It has a strong dynamical signature with peak velocities at 700 m depth of 13.9 cm s⁻¹ in cyclogeostrophic balance. The eddy has a small radius of 6.2 km corresponding to high Rossby number of −0.45. The vorticity at the eddy center reaches 0.8f. Cross‐stream isopycnic diffusion of tracers between the eddy core and the surroundings is found to be very limited due to dynamical barriers set by the SCV associated with a diffusivity coefficient of about 0.2 m² s⁻¹. The deep core is nutrients‐depleted with concentrations of nitrate, phosphate, and silicate, 13–18% lower than the rich surrounding waters. However, the nutriclines are shifted of about 20–50 m toward the surface thus increasing the nutrients availability for phytoplankton. Chlorophyll‐a concentrations at the deep chlorophyll maximum are subsequently about twice bigger as compared to outside. Pigments further reveal the predominance of nanophytoplankton inside the eddy and an enhancement of the primary productivity. This study demonstrates the important impact of postconvective SCVs on nutrients distribution and phytoplankton community, as well as on the subsequent primary production and carbon sequestration.

During the winter 2013, an intense observation and monitoring was performed in the north-western Mediterranean Sea to study deep water formation process that drives thermohaline circulation and biogeochemical processes (HYMEX SOP2 and DEWEX projects). To observe intensively and continuously the impact of deep convection on oxygen (O₂) ventilation, an observation strategy was based on the enhancement of the Argo-O₂ floats to monitor the offshore dense water formation area (DWF) in the Gulf of Lion prior to and at the end of the convective period (December 2012 to April 2013). The intense O₂ measurements performed through shipborne CTD casts and Argo-O₂ floats deployment revealed an O₂ inventory rapidly impacted by mixed layer (ML) deepening on the month scale. The open-sea convection in winter 2013 ventilated the deep waters from mid-February to the end of May 2013. The newly ventilated dense water volume, based on an Apparent Oxygen Utilization (AOU) threshold, was estimated to be about 1.5 × 10¹³ m³ during the DWF episode, increasing the deep O2₂ concentrations from 196 to 205 µmol kg⁻¹ in the north-western basin.

The evolution of the stratification of the north-western Mediterranean between summer 2012 and the end of winter 2013 was simulated and compared with different sets of observations. A summer cruise and profiler observations were used to improve the initial conditions of the simulation. This improvement was crucial to simulate winter convection. Variations of some parameters involved in air - sea exchanges (wind, coefficient of transfer used in the latent heat flux formulation, and constant additive heat flux) showed that the characteristics of water masses and the volume of dense water formed during convection cannot be simply related to the time-integrated buoyancy budget over the autumn - winter period. The volume of dense water formed in winter was estimated to be about 50,000 km³ with a density anomaly larger than 29.113 kg m^-3. The effect of advection and air/sea fluxes on the heat and salt budget of the convection zone was quantified during the preconditioning phase and the mixing period. Destratification of the surface layer in autumn occurs through an interaction of surface and Ekman buoyancy fluxes associated with displacements of the North Balearic front bounding the convection zone to the south. During winter convection, advection stratifies the convection zone: from December to March, the absolute value of advection represents 58 % of the effect of surface buoyancy fluxes.

We present here a unique oceanographic and meteorological data set focus on the deep convection processes. Our results are essentially based on in situ data (mooring, research vessel, glider, and profiling float) collected from a multiplatform and integrated monitoring system (MOOSE: Mediterranean Ocean Observing System on Environment), which monitored continuously the northwestern Mediterranean Sea since 2007, and in particular high-frequency potential temperature, salinity, and current measurements from the mooring LION located within the convection region. From 2009 to 2013, the mixed layer depth reaches the seabed, at a depth of 2330m, in February. Then, the violent vertical mixing of the whole water column lasts between 9 and 12 days setting up the characteristics of the newly formed deep water. Each deep convection winter formed a new warmer and saltier “vintage” of deep water. These sudden inputs of salt and heat in the deep ocean are responsible for trends in salinity (3.3 ± 0.2 × 10−3/yr) and potential temperature (3.2 ± 0.5 × 10−3 C/yr) observed from 2009 to 2013 for the 600–2300 m layer. For the first time, the overlapping of the three “phases” of deep convection can be observed, with secondary vertical mixing events (2–4 days) after the beginning of the restratification phase, and the restratification/spreading phase still active at the beginning of the following deep convection event.

The Northwestern Mediterranean (NWMed) Sea includes one of the best observed ocean deep convection sites in the World. An observing system simulation experiment (OSSE) is developed to provide a methodology for estimating observing network errors. It is applied to quantify dense water volumes in the NWMed during 2012-2013 with their observation error from MOOSE network. Results from the OSSE show low spatiotemporal sampling errors, which confirms MOOSE network ability to measure dense waters. However, results are highly sensitive to instrumental stability. The dense water volume is then estimated in observations from four ship cruises between summers 2012 and 2013. A large seasonal cycle is found, maximal in spring 2013 and dominated by the area west of 6.58E. The dense water volume ( \sigma₀ 29.11 kg/m³) is stable between summer 2012 (13.3 +/- 0.6 x 10¹³ m³) and winter 2013 (13.7 +/- 1.3 x 10¹³ m³). It increases dramatically in spring 2013 (17.7 +/- 0.9 x 10¹³ m³) due to an intense convective event, and it finally decreases rapidly in summer 2013 (15.1 +/- 0.6 x 10¹³ m³) due to restratification and spreading. We estimate an open-sea dense water formation (DWF) rate of 1.4 +/- 0.3 Sv between summer 2012 and spring 2013 over the studied area, extrapolated to 2.3 +/- 0.5 Sv over the whole NWMed Sea and for the optimal timing. This is to our knowledge the highest measured DWF rate, suggesting winter 2013 was exceptionally convective. The observed restratification rate between spring and summer 2013 is -0.8 +/-0.4 Sv. This study provides robust quantifications of deep convection during an exceptional event that will allow to evaluate numerical simulations.

The HYdrological cycle in the Mediterranean Experiment (HyMeX) Special Observing Period 2 (SOP2, January 27–March 15, 2013) was dedicated to the study of dense water formation in the Gulf of Lion in the northwestern Mediterranean. This paper outlines the deep convection of winter 2012–2013 and the meteorological conditions that produced it. Alternating phases of mixing and restratification are related to periods of high and low heat losses, respectively. High-resolution, realistic, three-dimensional models are essential for assessing the intricacy of buoyancy fluxes, horizontal advection, and convective processes. At the submesoscale, vertical velocities resulting from symmetric instabilities of the density front bounding the convection zone are crucial for ventilating the deep ocean. Finally, concomitant atmospheric and oceanic data extracted from the comprehensive SOP2 data set highlight the rapid, coupled evolution of oceanic and atmospheric boundary layer characteristics during a strong wind event.

Since 2010, an intense effort in the collection of in situ observations has been carried out in the northwestern Mediterranean Sea thanks to gliders, profiling floats, regular cruises, and mooring lines. This integrated observing system enabled a year-to-year monitoring of the deep waters formation that occurred in the Gulf of Lions area during four consecutive winters (2010-2013). Vortical structures remnant of wintertime deep vertical mixing events were regularly sampled by the different observing platforms. These are Submesoscale Coherent Vortices (SCVs) characterized by a small radius ($5-8 km), strong depth-intensified orbital velocities ($10-20 cm s 21) with often a weak surface signature, high Rossby ($0.5) and Burger numbers O(0.5-1). Anticyclones transport convected waters resulting from intermediate ($300 m) to deep ($2000 m) vertical mixing. Cyclones are characterized by a 500-1000 m thick layer of weakly stratified deep waters (or bottom waters that cascaded from the shelf of the Gulf of Lions in 2012) extending down to the bottom of the ocean at $2500 m. The formation of cyclonic eddies seems to be favored by bottomreaching convection occurring during the study period or cascading events reaching the abyssal plain. We confirm the prominent role of anticyclonic SCVs and shed light on the important role of cyclonic SCVs in the spreading of a significant amount ($30%) of the newly formed deep waters away from the winter mixing areas. Since they can survive until the following winter, they can potentially have a great impact on the mixed layer deepening through a local preconditioning effect.

Nitrate, phosphate, and silicate concentration profiles were measured at monthly frequency at the DYFAMED time-series station (central Ligurian Sea) between 1991 and 2011. The resulting data set, which constitutes the longest open-ocean time-series in the Mediterranean Sea, underwent quality control. A reproducible climatological pattern was observed with an unprecedented resolution, confirming the typical seasonal cycle of mid-latitudes. In summer and autumn, when the water mass is well stratified, i.e. the mixed layer depth (MLD) is shallow, nutrient concentrations in surface are very low or under the detection limit. In winter, as a result of the MLD extent, nutrients are supplied to the surface layer. Then, nutrient concentrations progressively decrease during spring. MLD appears to play a key role in controlling nutrient availability in the surface layer, but a direct, quantitative relationship between MLD and nutrient concentrations is difficult to establish due to undersampling. Regarding nutrient molar ratios (N:P, Si:N, and Si:P), results show anomalous values compared to those of other oceanic regions, presumably due to strong influence of external sources. As a consequence, nutrient molar ratios exhibit a seasonal pattern, with, in particular, an increase of the N:P ratio in condition of stratification. Over the period 1991–2011, the DYFAMED data set reveals decadal trends in nitrate and phosphate concentrations in deep waters (+0.23% and –0.62%, respectively) resulting in increasing N:P and Si:P ratios (+1.14% and +0.85% per year, respectively). Such a long-term variability is presumably related to changes in water mass and/or changes in external sources, even if it is difficult to assess due to not enough concomitant data from atmospheric and riverine inputs.

Since 2007, gliders have been regularly deployed in the northwestern Mediterranean Sea, a crucial region regarding the thermohaline circulation of the Mediterranean Sea. It revealed for the first time very warm (10.48C) and saline (10.1) submesoscale anticyclones at intermediate depth characterized by a small radius ($5 km), high Rossby ($0.3), and Burger ($0.7) numbers. They are likely order of 10 to be formed each year, have a life time order a year and certainly contribute significantly to the spreading of the Levantine Intermediate Waters (LIW) toward the whole subbasin, thus potentially impacting wintertime vertical mixing through hydrographical and dynamical preconditioning. They could be mainly formed by the combined action of turbulent mixing and flow detachment of the northward flow of LIW at the northwestern headland of Sardinia. Upwelling conditions along the western coast of Sardinia associated with a southward geostrophic flow within the upper layers seem to play a key role in their formation process.

Two profiling floats, equipped with nitrate concentration sensors were deployed in the northwestern Mediterranean from summer 2012 to summer 2013. Satellite ocean color data were extracted to evaluate surface chlorophyll concentration at float locations. Time series of mixed layer depths and nitrate and chlorophyll concentrations were analyzed to characterize the interplay between the physical-chemical and biological dynamics in the area. Deep convection (mixed layer depth > 1000 m) was observed in January-February, although high-nitrate surface concentrations could be already observed in December. Chlorophyll increase is observed since December, although high values were observed only in March. The early nitrate availability in subsurface layers, which is likely due to the permanent cyclonic circulation of the area, appears to drive the bloom onset. The additional nitrate supply associated to the deep convection events, although strengthening the overall nitrate uptake, seems decoupled of the December increase of chlorophyll.

The Mediterranean region is frequently affected by heavy precipitation events associated with flash floods, landslides, and mudslides that cause hundreds of millions of euros in damages per year and often, casualties. A major field campaign was devoted to heavy precipitation and flash floods from 5 September to 6 November 2012 within the framework of the 10-year international HyMeX (Hydrological cycle in the Mediterranean Experiment) dedicated to the hydrological cycle and related high-impact events. The 2- month field campaign took place over the Northwestern Mediterranean Sea and its surrounding coastal regions in France, Italy, and Spain. The observation strategy of the field experiment was devised to improve our knowledge on the following key components leading to heavy precipitation and flash flooding in the region: i) the marine atmospheric flows that transport moist and conditionally unstable air towards the coasts; ii) the Mediterranean Sea acting as a moisture and energy source; iii) the dynamics and microphysics of the convective systems producing heavy precipitation; iv) the hydrological processes during flash floods. This article provides the rationale for developing this first HyMeX field experiment and an overview of its design and execution. Highlights of some Intense Observation Periods illustrate the potential of the unique datasets collected for process understanding, model improvement and data assimilation.

The present data publication provides permanent links to original and updated versions of validated data files. The data files include properties of seawater, particulate matter and dissolved matter that were measured from discrete water samples collected with Niskin bottles during the 2009-2013 Tara Oceans expedition. Properties include pigment concentrations from HPLC analysis (10 depths per vertical profile, 25 pigments per depth), the carbonate system (Surface and 400m; pH (total scale), CO₂, pCO₂, <em>f</em>CO₂, HCO₃, CO₃, Total alkalinity, Total carbon, OmegaAragonite, OmegaCalcite, and dosage Flags), nutrients (10 depths per vertical profile; NO₂, PO₄, NO₂/NO₃, SI, quality Flags), DOC, CDOM, and dissolved oxygen isotopes. The Service National d'Analyse des Paramètres Océaniques du CO₂, at the Université Pierre et Marie Curie, determined CT and AT potentiometrically (Edmond 1970; DOE 1994) on samples preserved according to Dickson et al. (2007). More than 250 vertical profiles of these properties were made across the world ocean. DOC, CDOM and dissolved oxygen isotopes are available only for the Arctic Ocean and Arctic Seas (2013).

In the last 5 years, an unprecedented effort in the sampling of the Northern Current (NC) has been carried out using gliders which collected more than 50 000 profiles down to 1000m maximum along a few repeated sections perpendicular to the French coast. Based on this dataset, this study presents a very first quantitative picture of the NC on 0-1000m depth. We show its mean structure of temperature and salinity characterized by the different Water Masses of the basin (Atlantic Water, Winter Intermediate Water, Levantine Intermediate Water and Western Mediterranean Deep Water) for each season and at different location. Geostrophic currents are derived from the integration of the thermal-wind balance using the mean glider-estimate of the current during each dive as a reference. Estimates of the heat, salt, and volume transport are then computed in order to draw an heat and salt budget of the NC. The results show a strong seasonal variability due to the intense surface buoyancy loss in winter resulting in a vertical mixing offshore that makes the mixed layer depth reaching several hundreds of meters in the whole basin and in a very particular area down to the bottom of the sea-floor (deep convection area). The horizontal density gradient intensifies in winter leading to geostrophic currents that are more intense and more confined to the continental slope, and thus to the enhancement of the mesoscale activity (meandering, formation of eddies through baroclinic instability...). The mean transport estimates of the NC is found to be about 2-3Sv greater than previous spurious estimates. The heat budget of the NC also provides an estimate of the mean across shore heat/salt flux directly impacting the region in the Gulf of Lion where deep ocean convection, a key process in the thermohaline circulation of the Mediterranean Sea, can occur in Winter.

Les risques hydrométéorologiques sont au coeur du programme de recherche HyMeX sur le cycle de l'eau en Méditerranée. HyMeX a pour ambition d'améliorer leur prévision, de mieux connaître leur variabilité à l'échelle pluriannuelle et de renseigner sur leur évolution, dans le contexte du changement climatique. À cette fin, deux campagnes de mesures dédiées à ces événements extrêmes (SOP1 : pluies intenses et crues rapides ; SOP2 : vents forts et formation d'eaux denses) sont organisées en Méditerranée nord-occidentale, entre septembre 2012 et mars 2013.

Existing coastal observatories in European waters are composed of platforms such as moored buoys, piles, profiling systems, gliders, ';ferryboxes' and automated systems on board of ships of opportunity. JERICO project strives to integrate existing infrastructures and provides a platform for the identification and dissemination of best practices for the design, implementation, operation and maintenance of observing systems and the dissemination of data. In order to reach these objectives several kinds of actions are undertaken, amongst which the offer of Trans-National Access (TNA) to a number of coastal observatories and calibration facilities for international research and technology development. This presentation will give a short overview of the selected TNA proposals and a focus will be drawn on some of the TNA results. Calibrating sensors regularly is the prime requirement for getting reliable data from coastal observatories and ensuring their long-term relevance as viable providers of information on the marine environment. The calibration facilities at the HCMR complex in Crete hosted users for calibration experiments. The first one was accessed by a HCMR team to improve their experience in calibrating high-quality oceanographic temperature sensors using primary ITS-90 reference standards. The experiment involved full calibrations of two SBE 35 thermometers from Sea-Bird Electronics, Inc. owned by the HCMR that will be used as reference sensors for temperature measurements in their calibration laboratory in Crete. Gliders make oceanographic measurements traditionally collected by research vessels or moored instruments, but at a fraction of the costs. The GESEBB glider Mission started in July 2013, in the southeastern Bay of Biscay. The objective of the mission is sampling the characteristics of a mesoscale eddy that appears in the southeastern Bay of Biscay, during spring and summer. The origin of this structure is associated with the strength and extension of a winter warm flow on the cantabrian slope. Since this eddy is retained in the study area during months, it is expected that during Jul.-Aug. 2013 it will be close to the position observed in the previous figures Fixed platforms allow long term -sensor testing and -measurements. The presented experiment is led by CNRS/OBS-VLFR and consists in the implementation of automatic Dissolved Oxygen (DO) measurements in the mooring operated by CNR/ISMAR in the Corsica Channel (Ligurian Sea). The deployment began in Nov. 2012 and lasted for twelve months. The final purpose of the research is to integrate the DO concentration in the long term time series data in the Ligurian basin to track and evaluate the water mass variability and to estimate the time lag between the eastern and the western part of the Ligurian Sea. The development of high-quality and comprehensive coastal observing systems has only recently moved forward, principally at national and regional level. In this overall context, the JERICO project aims at creating a solid and transparent organization towards an operational service for the continuous and sustainable delivery of high quality environmental data and information products related to the marine environment in European coastal and shelf seas. It promotes joint research initiatives and standardisation as illustrated by TNA experiments.

The temporal evolution of the vertical export flux at the DYFAMED time-series station (Ligurian Sea) over the last 20 years reveals a strong interannual variability. Winter convection allows particulate (and dissolved) matter to be vertically exported (“flush-down” effect). The efficiency of this process determines also the concentration of nutrients brought to surface waters and, therefore, the intensity of the subsequent phytoplankton bloom. The sequence “convection-bloom” is the main driving force of vertical export flux in this region. The present work attempts to better identify the parameters that control vertical export flux dynamics by observing a 20 year time-series in relation with the temporal variability of mixed layer depth and surface primary production. The consequences of a more stratified water column in the future on biological productivity and vertical export flux are pointed out.

The winter of 2012 experienced peculiar atmospheric conditions that triggered a massive formation of dense water on the continental shelf and in the deep basin of the Gulf of Lions. Multiplatforms observations enabled a synoptic view of dense water formation and spreading at basin scale. Five months after its formation, the dense water of coastal origin created a distinct bottom layer up to a few hundreds of meters thick over the central part of the NW Mediterranean basin, which was overlaid by a layer of newly formed deep water produced by open-sea convection. These new observations highlight the role of intense episodes of both dense shelf water cascading and open-sea convection to the progressive modification of the NW Mediterranean deep waters.

The winter of 2012 experienced peculiar atmospheric conditions that triggered a massive formation of dense water on the continental shelf and in the deep basin of the Gulf of Lions. Multi-platforms observations enabled, with an unprecedented resolution, a synoptic view of dense water formation and spreading at basin scale. Five months after its formation, the dense water of coastal origin created a distinct bottom layer up to few hundreds of meters thick over the central part of the NW Mediterranean basin, which was overlaid by a layer of newly formed deep water produced by open-sea convection. These observations highlight the role of intense episodes of both dense shelf water cascading and open-sea convection to the alteration of the characteristics of the NW Mediterranean deep waters.

D'initiative française, le projet international HyMeX a pour objectif d'améliorer la compréhension du cycle de l'eau en Méditerranée, de sa variabilité, de l'échelle de l'événement météorologique aux échelles saisonnières et interannuelles, et de ses caractéristiques sur une décennie, dans un contexte de changement global. Le projet est motivé par le rôle déterminant des processus de mésoéchelle, couplés entre l'atmosphère, la mer et la terre, sur la variabilité du système climatique et sur le déclenchement d'événements hydrométéorologiques extrêmes (précipitations et inondations, vents forts et convection océanique, canicules et sécheresses). Le projet vise enfin à évaluer les conséquences de ces événements extrêmes sur la vulnérabilité sociale et économique de cette région et sa capacité d'adaptation.

Since 2008, gliders repeated transects crossing the basin of the North Western Mediterranean Sea and regularly sampled mesoscale structures with an high horizontal resolution of about 2-3 km between each profile required in that region of small internal deformation radius (<10km). By analysing more than 50 000 profiles collected by these gliders in the last 5 years, we were able to identify several types of eddies regarding the water mass composing their cores: Winter Intermediate Water (WIW), Levantine Intermediate Water (LIW), Western Mediterranean Deep Water (WMDW). Most of them are anticyclonic structures with Rossby Number greater than 0.1 and tend to be characterized by a core in the inner ocean. Some of them whose formation has been dated several months back in time can be qualified as long lived features. Of particular interest to assess the role of mesoscale eddies in the ocean circulation, a Submesoscale Coherent Vortex (SCV) composed of newly WMDW was observed nine months after its formation. We also used a 1 year run of a high resolution (1km, 40 vertical levels) numerical model of the region (SYMPHONIE) which is able to reproduce similar eddies. In this study we discuss their formation process (instability of the boundary current, or diapycnal mixing followed by geostrophic adjustment) based on comparisons between these observations and the model outputs, and try to estimate their impact on the general circulation of this basin.

From 2008 on, repeated sections crossing the Northern Current (NC) were operated by gliders as part of a global observing system (MOOSE project) of the North Western Mediterranean Sea. This work is dedicated to the analysis of the submesoscale thermohaline variability at the margin of this current observed by gliders. The mean circulation of the basin is characterized by a cyclonic gyre (whose Northern part is the so-called NC) associated with a doming of the isopycnals preconditionning the whole interior basin to great vertical mixing. The thermal and haline differences between the Atlantic Water (AW) transported by the NC and older and modified AW off the coast leads to a frontal structure. Especially in winter, when the mixed layer depth used to reach several hundreds of meters offshore, isopycnal outcropping and the role of frontal processes are enhanced leading to intense variability at scales smaller than the deformation radius. Based on diagnostics using the Potential Vorticity (PV) computed from the glider data assuming quasi-geostrophic conditions and no variation in the alongshore direction, we discuss the dynamical processes at work, with a focus on 2 typical examples: (1) the first example takes place in winter during a strong vertical mixing event. While the glider crossed the frontal region, the temperature and salinity fields exhibit vertical motions at depths about 0-400m. Frontogenesis might be at play through mesoscale strain since the glider shows an intense mesoscale activity but a weak stratification and enhanced horizontal buoyancy gradient actually make the Ertel PV reach negative values and symmetric instability is likely to be a prominent mechanism explaining the observed variability. (2) the second example takes place in spring. We identify an episode of down-front wind blowing during the glider deployment which could have extracted PV from the surface layer. However, the geostrophic turbulence is in that case likely to play a key role in the formation of the observed variability of the temperature and salinity since it is organized along slopes characterized by an aspect ratio of an order of f/N.

Winter 2004-05 marks the beginning of the Western Mediterranean Transition, involving a change in the physical properties of the water masses in the Western Mediterranean. Temperature and salinity decreased in the intermediate water and increased suddenly in the bottom layer. All these changes are related to strong deep water convection events in winters 2004-05 and 2005-06 in the Gulf of Lions and the Ligurian subbasin respectively. A CTD time series collected at the DYFAMED station (Ligurian subbasin) has been analysed to study the effect of the ventilation of the water column due to the large volume of new deep water formed in both winters. Also the impact of the new saltier and warmer deep water mass formed in both winters on the resident deep and intermediate waters has been evaluated. Temperature and salinity changes have been decomposed into changes along isopycnals and vertical displacements of isopycnals (pure warming, pure freshening and pure heaving according to the nomenclature in Bindoff and McDougall, 1994). The results of this analysis show that the formation of a large volume of new deep water caused the upward displacement of the resident deep water. Therefore, the decrease of temperature and salinity in the intermediate water was not only due to actual water mass changes, but also to the uplifting of Western Mediterranean Deep Water. Isopycnals situated at the bottom of the water column before the Western Mediterranean Transition became cooler and fresher after the event. A combination of pure warming and salting is the most plausible mechanism explaining this temperature and salinity decrease observed on isopycnals. (C) 2012 Elsevier B.V. All rights reserved.

Anthropogenic radionuclides (3 H, 14 C, and 129I) stemmed from nuclear weapons tests were found in 1999 to be very abundant in the surface of the southern Indian Ocean, comparable to those in the subtropical Northwest Pacific Ocean. The observed radionuclide variations with latitude/longitude in the southern Indian Ocean are not due to deposition patterns of global fallout, but due to transport of water masses from the western Pacific through the Indonesian seas, and different water fronts present in the Crozet Basin of the Indian Ocean. High radionuclide concentrations observed in the latitudinal belt of 20-40°S are associated with the Indian Ocean Subtropical Gyre which acts as a reservoir of radionuclides, maintaining their high concentrations on a time scale of several decades. 14 C data documents that the southern Indian Ocean is an important for sink of anthropogenic carbon. The isotopic tracers reveal the evidence of the most intense surface gradients and presence of several water masses in the southern Indian Ocean, which makes the region one of the most dynamic places of the World Ocean.

Anthropogenic Sr-90, Pu-239,Pu-240 and Am-241 were used as tracers of water mass circulation in the Crozet Basin of the South Indian Ocean, represented by three main water fronts-Agulhas (AF), Subtropical (STF) and Subantarctic (SAF). Higher Sr-90 concentrations observed north of 43A degrees S were due to the influence of AF and STF, which are associated with the south branch of the Subtropical gyre, which acts as a reservoir of radionuclides transported from the North to the South Indian Ocean. On the other hand, the region south of 43A degrees S has been influenced by SAF, bringing to the Crozet Basin Antarctic waters with lower radionuclide concentrations. The Pu-238/Pu-239,Pu-240 activity ratios observed in water and zooplankton samples indicated that, even 35 years after the injection of Pu-238 to the Indian Ocean from the burn-up of the SNAP-9A satellite, the increased levels of Pu-238 in surface water and zooplankton are still well visible. The radionuclide concentrations in seawater and their availability to zooplankton are responsible for the observed Po-210, Pu-239,Pu-240 and Am-241 levels in zooplankton.

ChArMEx is a new regional project on tropospheric chemistry and aerosols in the Mediterranean proposed by the French community, calling for international cooperation. ChArMEx proposes an integrated modelling and observational approach to study budgets of species, chemical and dynamical processes, intense events, trends, and impacts. The objectives include an assessment of the recent past, present and future states of the atmospheric chemistry and of related impacts on air quality, regional climate and marine biogeochemistry. The experimental strategy includes long-term monitoring, 2 years of enhanced surface observations, and summer intensive campaigns with research aircrafts and drifting balloons to study the aging of continental air masses over the basin when pollutants and desert dusts are at their maximum and likely impact the regional climate. Focus is presently put on the western basin. Synergies are built with other Mediterranean projects on the hydrological cycle (HyMEx) and marine ecosystems (MERMEX).

Dissolved and particulate samples were collected to study the distribution of thorium isotopes (234Th, 232Th and 230Th) in the water column of the Indian sector of the Southern Ocean (from 42°S to 47°S and from 60°E to 66°E, north of the Polar Front) during Austral summer 1999. Vertical profiles of excess 230Th (230Thxs) increases linearly with depth in surface water (0–100 m) and a model was applied to estimate a residence time relative to the thorium scavenging (τscav). Low τscav in the Polar Front Zone (PFZ) are found, compared to those estimated in the Subtropical Front Zone (STZ). Changes in particle composition between the PFZ and STZ could influence the 230Thxs scavenging efficiency and explain this difference. An innovative coupling between 234Th and 230Thxs was then used to simultaneously constrain the settling velocities of small (0.6–60 μm) and large (above 60 μm) particles. Although the different hydrological and biogeochemical regimes visited during the ANTARES IV cruise did not explain the spatial variation of sinking velocity estimates, our results indicate that less particles may reach the seafloor north (60 ± 2 m d− 1, station 8) than south of the Agulhas Return Current (119 ± 23 and 130 ± 5 m d− 1 at stations 3 and 7, respectively). This information is essential for understanding particle transport and by extension, carbon export. In the deep water column, the 230Thxs concentrations did not increase linearly with depth, probably due to lateral transport of North Atlantic Deep Water (NADW) from the Atlantic to the Indian sector, which renews the deep waters and decreases the 230Thxs concentrations. A specific 230Thxs transport model is applied in the deep water column and allows us to assess a “travel time” of NADW ranging from 2 to 15 years.

The water column deficiencies of 234Th were used to estimate the Particulate Organic Carbon (POC) fluxes in the Indian Sector of the Southern Ocean. Samples were collected in January–February 1999 in a frontal zone from 42°S to 47°S and from 60°E to 66°E during the ANTARES 4 cruise. Beta counting was used to measure the 234Th activities onboard. The 234Th export fluxes were estimated from the 234Th/238U disequilibria using a steady state 234Th model. A non-steady state model gave results close to the steady-state model in the Subtropical Zone and could not be used in the Subantarctic Zone due to a strong vertical mixing event. Small and large particles analysis indicated that the POC/234Th ratios decreased when the particle size increased. From the POC/234Th ratios on the large filtered particles, it appears that the POC export fluxes exported below 100 m were very low (from 0.10 to 2.53 mmolC m−2 d−1) compared to those observed in the Southern Ocean and (Deep Sea Res. II 48 (2001) 4275; Deep Sea Res. II 47 (15–16) (2000) 3451; Deep Sea Res. II 44 (1997) 457) and with a strong zonal variation . It is hypothesized that the low POC export fluxes were related to the low predominance of diatoms, characteristic at the end of a bloom period. In this way, the very low POC export observed in the Subtropical Zone suggests an efficient remineralization process and/or a high bacterial activity. Otherwise, a decoupling between the primary production and the POC export derived from 234Th could also explain the low POC export.

Ce travail, basé sur l'utilisation des déséquilibres radioactifs des isotopes du thorium (Th), a été réalisé dans le but de quantifier les flux de particules et les échanges entre la phase dissoute et particulaire dans trois bassins océaniques distincts. En mer de Barents, région peu profonde, les mesures de flux de 234Th dans la colonne d'eau ont montré qu'en été les pièges à particules avaient une bonne efficacité de collecte. Pour estimer les flux de Carbone Organique Particulaire (POC) exportés, on utilise un rapport POC/234Th. Ce dernier est 10 fois plus faible dans les grosses particules piégées que dans les particules en suspension. Ceci est sans doute dû à une reminéralisation préférentielle du POC sur le 234Th et à une prépondérance de pelotes fécales dans les pièges. Ces résultats montrent l'importance des grosses particules dans le flux vertical de matière. Cela suggère que les valeurs d'export de carbone basé sur la composition des particules en suspension dans les autres régions de l'Arctique ont été sans doute surestimées. Dans le secteur Indien de l'océan Austral, les estimations des flux de POC exportés sont maximum dans la région du Front Polaire (PFZ). Les profils de 230Th dans la colonne d'eau montrent un renouvellement rapide des eaux de fond (1-15 ans) dû à l'écoulement de l'eau Nord-Atlantique Profonde (NADW) et de l'eau Antarctique de Fond (AABW) dans la zone d'étude. Les processus dynamiques concernant les particules marines en surface ont pu être quantifiés grâce au couplage 230Th-234Th. Ces estimations suggèrent que les grosses particules filtrées ont une vitesse de chute plus faible dans la zone au nord du front des Aiguilles (AF). En outre, on a pu constater que les processus de désorption et de désagrégation étaient rapides conséquence, sans doute, de la présence de matière détritique importante et/ou d'activité bactérienne intense limitant ainsi l'export de matière organique vers le fond. Dans le cadre des travaux menés en mer Méditerranée Occidentale, l'utilisation des isotopes 230Th et 232Th dans les expériences d'incubations in vitro de grosses particules marines nous ont permis de montrer que le processus d'agrégation des grosses particules filtrées doit être pris en compte dans les modèles concernant la dynamique des particules. D'autre part, les résultats suggèrent que les flux d'éléments réfractaires sont dominés par la dissolution des particules continentales provenant des marges. Pour quantifier les apports des particules lithogènes en Méditerranée Occidentale, il convient donc de prendre en compte le transport advectif.

The extent and the time constant of dissolution of a set of inorganic tracers during the decomposition of large marine particles are estimated through in vitro experiments. Large marine particles were collected with in situ pumps at 30 m and 200 m in the Ligurian Sea at the end of summer. They were subsequently incubated under laboratory conditions with their own bacterial assemblage for 20 days in batches under oxic conditions in the dark. Some samples were initially sterilized in Ž. Ž. order to observe possible differences between biotic and abiotic samples. Particulate) 0.2 mm and dissolved-0.2 mm Ž. concentrations of Al, Sr, Ba, Mn, Rare Earth Elements REE and Th isotopes were determined over time. We obtain percentages of dissolution in agreement with the general knowledge about the solubility of these tracers: Th f Al-Heavy REE-Light REE-Mn-Ba-Sr. For Mn and Ce, precipitationradsorption occurs at the end of the experiment probably due to their oxidation as insoluble oxides. Particulate residence time of the tracers ranged from less than 1 day to 10-14 days. During the experiment, biological activity has a control on the dissolution process through the remineralization of particulate organic carbon. In the 30 m experiment, the observed dissolution of aragonite indicates that the pH of the incubation solution significantly decreases in response to the CO respiration. Speciation calculations suggest that this pH 2 shift leads to a decrease of the complexation of dissolved REE by carbonate ions. Th isotope data are consistent with an irreversible dissolution of Th and they do not support a rapid particle-solution chemical equilibrium. q

The temperature dependence of water self-diffusion in the gel and liquid crystalline phases of the potassium palmitate/water system was examined using pulsed field gradient spin-echo (PGSE) low resolution NMR experiments. The temperature dependence of the water self-diffusion in lamellar and hexagonal phases was characterised by trends parallel to pure water. The average ”two-site” self- diffusion model was used to analyse the composition dependence of the self-diffusion coefficients. Temperature dependence of water self-diffusion in the gel phase presented different and interesting behaviour. The slopes of the Arrhenius self-diffusion were strongly composition dependent. The results were interpreted as a dependence on T of the bound water fraction, while the self-diffusion obstruction factor was considered constant.

Pulsed Field Gradient NMR experiments, in their original time domain, have been carried out to separate both water and surfactant self-diffusion coefficients in the micellar solution of the system cetyltrimethylammonium bromide/water. These results have been supported by those obtained by NMR experiments performed with a Fourier Transform spectrometer. The water self-diffusion coefficients were used to calculate the obstruction effect of the micellar aggregates in accordance with a stoichiometric model already used for lyotropic mesophases. It was found that the micellar aggregates change shape with the concentration and are characterized by an average hydration number of approximately 9 +/- 3.